barSeed - Barley Seed Development Database

Probe CUST_27586_PI390587928

Source Contig U35_19558

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27586_PI390587928	Hv_44K_v2	TGTACTGATGGATTATTTGGATGCGGTGCATGGATATTTATGTGCTGAAACCGTTTCTTG	1208	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.429	1.370	1.145	0.750	0.389	0.317
Raw	12297.367	17482.960	13440.220	13343.677	2524.743	2224.237

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64710.2	2788	2e-24	2708 - 2767	100	60 / 60	plus	ABC36874
MLOC	MLOC_64710.1	1446	2e-24	1362 - 1421	100	60 / 60	plus	ABC36874
JLOC1	JLOC1_42517.1	1339	8e-25	1254 - 1313	100	60 / 60	plus
Harvest21	ABC11180	1341	3e-25	1210 - 1269	100	60 / 60	plus
Harvest35	U35_19558	1340	3e-25	1209 - 1268	100	60 / 60	plus

Contig Sequence (1340 bp)

>U35_19558 1340 Hv_44K_v2
GCCCTTCGCTCCCTACCCTCCCCCCCTCTCTTCCGCCCGCGGCGGCTCAGACTTAAACCC
TAGAGCCGCTCCCCTCCTCGCCTCCGAAGCGCTCGCCGCCCGATTCGCCAATCCCCAATC
CCCCCTTGGAGGCGCTCCCCCGAAGGGCCTGCTGCTGCCTGTCATGGCTCGCGTCTACGT
GGGGAATCTGGATCCGCGCGCCACTGCGCGCGAGATCGAGGACGAGTTCCGCGTGTTTGG
GGTTCTGAAGAGTGTGTGGGTTGCTAGAAAGCCACCAGGATTTGCTTTCATCGACTTCGA
TGAGACCAGGGACGCAAAGGATGCAATTCGTGAATTGGATGGTAAGAATGGGTGGAGAGT
TGAGCTGTCAACCAAATCTGGCAGTGGCCGTGGCCGAGAACGTGAACGCTCTGGAGGTTC
TGATATGAAGTGCTATGAGTGTGGTGAAAGTGGTCACTTTGCACGAGAATGTCGCCTACG
GATTGGTTCTGGGGGCCTGGGTAGCGGAAGACGCCGCAGCCGAAGCCCGAGGCACCGCAG
CCGCAGCCGTAGCCGTAGCCCAAGATACCGCAGGAGCCCAAGCTATGGTAGAAGGAGCTA
CAGCCCACGGGATCGGTCTCCCAGGAAGCGAAGTTACAGCAGATCACCACCGCCTCCCCG
CGCGCGGAGCATCACCAGGTCTCCGCCGCCTGCCCGCGCACGAAGCATCAGCAGGTCACC
ACCGCCTGCCCGTGGGCGAAGCATCAACAGGTCACCACCGCCTACCCGTGCGCGAAGCAT
CAGCAGGTCACCTCCGCCTCCTCGCGCCAGAAGCATCAGCAGGTCACCACCGCCTCCTCG
TGCCAGAAGCATCAGCAGGTCACCACCACCTCCTCGTGCCAGAAGCATGAGCAAGTCACC
ACCACCTGCTCGTGAACAGAGCTATAGCAGGTCCCCTGCACAGCCACCCCAGCGTGAGGA
GTCCCCTTATGCTAATAACGCGTGAGCACTTAGTTCCACAATGCTGGAAGTGTTGTGGGG
TGGGGGCCTCCGCTTGTTTCCCTGAATGTTTTGGTATGACTATTGAATTGCCAGGCGACC
GAGTATGTTCTTCGTTGGCATTTTTTTTTGCTGCTGATACAATTGCGGAAGCAGGATTTC
TCTTGACTGGATGACTCTAGCGTATGTAGTTGGTCTTAAGACAAGATGTGTTTTTCTTCT
GTAACATTTGTACTGATGGATTATTTGGATGCGGTGCATGGATATTTATGTGCTGAAACC
GTTTCTTGAAAAAAAAAAAAAAAGGGCGGCCGCCCTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTGGGGGG

Homology of Contig U35_19558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g48460.3	232	1e-53
Arabidopsis v10	None