- Probe CUST_27584_PI390587928
- Source Contig U35_45822
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27584_PI390587928 | Hv_44K_v2 | TAAACAACATCATCTCTCTGGTGGGCCAGCAACTTGTATGGTTGACTTGGAGGTAGATGA | 374 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.603 | 1.099 | 1.959 | 1.675 | 0.810 | 0.694 |
| Raw | 10.649 | 25.248 | 46.105 | 65.255 | 10.219 | 9.372 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358997 | 3464 | 2e-24 | 2225 - 2284 | 100 | 60 / 60 | plus | ABC13586 |
| JLOC1 | JLOC1_5149.2 | 3477 | 8e-25 | 2100 - 2159 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_5149.1 | 3406 | 8e-25 | 2029 - 2088 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC45139 | 440 | 3e-25 | 375 - 434 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45822 | 440 | 3e-25 | 375 - 434 | 100 | 60 / 60 | plus |
Contig Sequence (440 bp)
>U35_45822 440 Hv_44K_v2 ATTCAAGGTGTCAACAGCCAGAATATGCTAGTTCAAGATTGCGAGAAGACTGGCTATATA GGTTTTCCTATTCATGTTCATGGCGGTTTTAGTGAGCGAACTGACGACTTGAAGAACATG TGCTACCCGAGTACCTCAACTGGACATGACAATAAAAAAGAGATGAATGGCATGATTCTT AATCAAAGAGAGACTGATAATATTACAATGATGTCCTCTGATAGTACTTTGAGCCGACAG AATAATGTGAAAGGTCCTGAACTAAAAGGGCCTGCAAAATGCCAGAAAGAATTATGGCAG TCAGCAACCCCTGTGGATTCCTTTTACCACCCTCCAGGGAATGGTCTGTATGCACAATCA GGTGCCCTGCAGCTTAAACAACATCATCTCTCTGGTGGGCCAGCAACTTGTATGGTTGAC TTGGAGGTAGATGACAGACG
Homology of Contig U35_45822 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |