- Probe CUST_27582_PI390587928
- Source Contig U35_45824
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_27582_PI390587928 | Hv_44K_v2 | TCGTAAAACCTCTTGAGGACATTTCACCACCCTCTACGGATCTTCCGGTGAAAATTATCC | 158 | GeneList: turquoise MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.061 | 1.174 | 1.291 | 0.922 | 0.468 | 0.584 |
Raw | 123.404 | 201.648 | 207.102 | 226.822 | 42.079 | 56.043 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK249722.1 | 1925 | 2e-24 | 1032 - 1091 | 100 | 60 / 60 | plus | None |
MLOC | MLOC_21045.3 | 437 | 2e-24 | 151 - 210 | 100 | 60 / 60 | plus | None |
MLOC | MLOC_21045.2 | 482 | 2e-24 | 196 - 255 | 100 | 60 / 60 | plus | None |
MLOC | MLOC_21045.4 | 1011 | 2e-24 | 144 - 203 | 100 | 60 / 60 | plus | None |
MLOC | MLOC_21045.1 | 1425 | 2e-24 | 654 - 713 | 100 | 60 / 60 | plus | None |
JLOC1 | JLOC1_14599.2 | 1064 | 8e-25 | 165 - 224 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_14599.1 | 1159 | 8e-25 | 254 - 313 | 100 | 60 / 60 | plus | |
Harvest21 | ABC45143 | 218 | 3e-25 | 159 - 218 | 100 | 60 / 60 | plus | |
Harvest35 | U35_45824 | 218 | 3e-25 | 159 - 218 | 100 | 60 / 60 | plus |
Contig Sequence (218 bp)
>U35_45824 218 Hv_44K_v2 GAGCTGCCTAGGATCACAATCCACATCTAGATCACAGATTACCCCTGGAGAGTTACTAGA ATCAATATTCACTGCACCTGAAAGATCTGAGGAGGAACCAAAAGTAAGGCGGTATGAATT GGGCGCAAATCGAAGGAGAGTTCCAGATCACAAACCANTCGTAAAACCTCTTGAGGACAT TTCACCACCCTCTACGGATCTTCCGGTGAAAATTATCC
Homology of Contig U35_45824 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |