- Probe CUST_27568_PI390587928
- Source Contig U35_21879
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27568_PI390587928 | Hv_44K_v2 | ATCCATCGATGTGGTGAACCTCTTATGTTGAATTTGAATTTGATTTCCCTTATGCGTTTC | 510 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.496 | 2.950 | 3.346 | 1.707 | 0.400 | 0.371 |
| Raw | 3936.348 | 35908.380 | 33605.833 | 27663.260 | 2242.210 | 2262.183 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_80727.1 | 680 | 2e-24 | 34 - 93 | 100 | 60 / 60 | minus | ABC31700 |
| JLOC1 | JLOC1_53750.1 | 680 | 8e-25 | 34 - 93 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC31700 | 560 | 8e-21 | 17 - 68 | 100 | 52 / 52 | minus | ABC31700 |
| Harvest35 | U35_21879 | 592 | 3e-25 | 511 - 570 | 100 | 60 / 60 | plus |
Contig Sequence (592 bp)
>U35_21879 592 Hv_44K_v2 CAGAGCTACTTCGCCACTTGCTTTCCCTTTAAACGTTCGTCTCGCGCCGCCTAAGATGGG GCCTCGGCAGGACCGGTCCGCCGTCGACGGGGGGCAAGGTAACGGCGCGCGGCCAGCCAT CGTCCGGTACAGGGAGTGCCAGCGCAACCTCCTGGCCGGGAACGGCCGGCATGTCGTTGA CGGCTGCCAAGGCTTCATGGCGTCAATAGGCGTCGATGAGGCTACCACGTTCCTCTGCGC GGCGTGTGGCTGCCACCGCAGCTTCCACAGGCGCGAGGTCGTCGACGAGTTCGGCGTCGA CTACCATGCTCCGGGGACGCCCCCCGCCAACGAAAGCCGCCGTTGAAGCAATGAAGCTTA TTGCTGATGCCTCTTGTTGCTCACGGTGAATTGGATCTGGCTGGATCATGCATGGCCCAG GCGCAGCTAGTAGTGTTTTAATTCGTCTTCCTTGTCGTCTTATGAAATTTGTGCGGATGA ATAATTTGCGGGGAGGCCCCGTCCGCGTAGATCCATCGATGTGGTGAACCTCTTATGTTG AATTTGAATTTGATTTCCCTTATGCGTTTCTATTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_21879 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |