- Probe CUST_27563_PI390587928
- Source Contig U35_19563
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27563_PI390587928 | Hv_44K_v2 | GCGGCTGTGCTGGGACTTTTGTACTATTGTTTCATTAATTAATAATGGACAAATTGTTGT | 507 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.162 | 1.333 | 1.114 | 0.861 | 0.365 | 0.438 |
| Raw | 3800.190 | 6756.813 | 4976.900 | 6197.457 | 890.839 | 1173.973 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63371.2 | 3134 | 2e-24 | 3068 - 3127 | 100 | 60 / 60 | plus | ABC19745 |
| MLOC | MLOC_63371.1 | 2446 | 2e-24 | 11 - 70 | 100 | 60 / 60 | minus | ABC19745 |
| JLOC1 | JLOC1_41498.7 | 3047 | 8e-25 | 2983 - 3042 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41498.6 | 2721 | 8e-25 | 2657 - 2716 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41498.5 | 2778 | 8e-25 | 2714 - 2773 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41498.4 | 2894 | 8e-25 | 2830 - 2889 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41498.3 | 2757 | 8e-25 | 2693 - 2752 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41498.2 | 2313 | 8e-25 | 2249 - 2308 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41498.1 | 2237 | 8e-25 | 2173 - 2232 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48339 | 514 | 3e-25 | 23 - 82 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_19563 | 590 | 3e-25 | 508 - 567 | 100 | 60 / 60 | plus |
Contig Sequence (590 bp)
>U35_19563 590 Hv_44K_v2 GAGTACTGCAGGGAGTCGATCCACCCCACACGCTGCCCAGACGACCTGAGGAAGAAGTGG AACCGCATGAAGACAAACTGGGGGTTTGTCCTGAAGACGACGACAGAGTAGGAGACGGCT GCCTCTGAAACGCCCGTCCCCATCTTGCCGTGGTAGGAGAAAGGGAAGTGAAGTGGCCGT GCCCTTTGGCGCTGTATCGGCGAAACGTCTCTGTCCTAGTCTCCTAGAGGCCTGTTTCGC CCTCTGTTGTGGCGCGGCGGCGATCGTCTGTCTATATTTATGGTGAATCTGGTGACTCCT CAACCAAAAAGGTTTTGGTGAGATGGGTGTGCAAGGCCCAAGGATGGTGATGATGGTAGA TGGGAGTGGGAACTGAAGTGCACAGACGTCATATGGACAAAACTCATGCTCCAGGTCATG TGTTGATGAACTGTATGATGAAGACTTGCATTATCAGCTAATTAATCTTGTACTACTAAG GCCTGACTGACAAAGTTGTTGTTTCCAGCGGCTGTGCTGGGACTTTTGTACTATTGTTTC ATTAATTAATAATGGACAAATTGTTGTTCTTCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_19563 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |