barSeed - Barley Seed Development Database

Probe CUST_27560_PI390587928

Source Contig U35_19566

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27560_PI390587928	Hv_44K_v2	GAGGATTAGTTTCCCTCACTTGACTACTACTAGTGTCTCGATAGCAACCCCCTTTGTAAC	639	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.467	1.660	1.032	0.829	0.384	0.472
Raw	397.802	690.409	378.805	478.218	77.449	103.869

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC12931	702	3e-25	640 - 699	100	60 / 60	plus	ABC12931
Harvest35	U35_19566	702	3e-25	640 - 699	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_19566 702 Hv_44K_v2
ATGTTGTCCAGCGAAGGGGGCGTTTTCAGGTTACATCAGATAGTCCTGGTCAAAAGGCAG
CTTCATCAGCTAGCAGCAACAGCAGGGCAAATTTACCAAGTGGAGTAACACGGCCAGCTT
CCAACTCATCCACAATTCTCCCGACACTACAATTCTTGATGCAGCAAAATAGTATGCAGA
AGGAAGTGCTAAGTAGATTGATTTCTTCAATTGAGGAAACATCTGATGCTTCCGATGCAA
GTACAGTTGGTTCATCTCAGTCATCTGGATCGCTTGCTAGAGAAAAGGGATTGGAGTCAT
ATGTCGTCCAACTACAGCGAAGTGTCACAGAACTCGCTGAGGAAGTGCAGAGATTAAAGC
TGAGAAATAATCAGCTTGAGCATCAGATCAATGGGTTGTCGAAAAAAGACGAAAGGTTGC
GAAGAGAGCATAGTACGAAGCAATGATAATGATATATTTATTCCCTGTAGTCCCCGTTGT
ATAATTCAGCTCCCCAATTTTGAACCTGGTTAGCGAAATTAATTGTATTACGTTTCGGAA
TCAGGTAGGTGTATCAATTGTAATTGTAAGTATATTAGCGAGTTCATTCACATTATAGTA
TACATTTTTGATTTGTACAGCATGCTTTGTGTTATCGGTGAGGATTAGTTTCCCTCACTT
GACTACTACTAGTGTCTCGATAGCAACCCCCTTTGTAACTTG

Homology of Contig U35_19566 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None