barSeed - Barley Seed Development Database

Probe CUST_27544_PI390587928

Source Contig U35_21885

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27544_PI390587928	Hv_44K_v2	CTATGTATAGGTCATGAGTGTGCTTATTGTGTTTGTTTTTAGTTGATGCTTTGTTTCGAG	975	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36501.1	1734	2e-24	533 - 592	100	60 / 60	minus	ABC17984
JLOC1	JLOC1_23508.1	1072	8e-25	26 - 85	100	60 / 60	minus
Harvest21	ABC17984	1075	3e-25	976 - 1035	100	60 / 60	plus	ABC17984
Harvest35	U35_21885	1100	3e-25	976 - 1035	100	60 / 60	plus

Contig Sequence (1100 bp)

>U35_21885 1100 Hv_44K_v2
TCGAACTCTCTGTCTCTGGGATCCCCCCGCAGAATCTACCCCTCCTAGCCTACAACTTCG
GCATCGGTGAGCGAGAGCGATGGCGAACCCTAATCTGGGAGCTGGATACGTGTTCCAACC
CACCGGCCGTGAGCTCGTCGACCACTACCTCATCCCCAGGGCGGGGCTCGGTGGCGACAT
CTTCCCCGGCCTCATCGTGGAGGGCGTAGACGTCTTGTCCTTGCGCCCTCGCGAGCTCCC
CTTCTCCCCCGACCACAAGAGGGATTACGGCGAGGTGTGGGGCTTCTTCTTCGCAGCAAA
GATTGCCGGCGAGACGTGCCCGACGCCGGGCGCCGGTGGGTGCTGGGTGCGGTACGGCCC
CGAGAAGGCGTACTACGGCGAGGGCGGCAGGGAGGTGGTGGCGTTCCGGCGCAGGTTCGC
GTACCACTTCACGTGGAACGACGGGGAGGTAGGTTCGCCGACACGGTGGCGGATGAAGGA
GTACCGGCTCAACAGGGATGCGGCCGCCTTCCGCAGCGCGCACCCTGGCCCCGAGGCGCC
GGGCGTTGTCTTCGTGGTCCACAAGGTGTACCGGAAGCCGATGATCCCCCAGCCGCCGCC
TTCCGACAGCAGCTCCAGCGAGGAGGAGGACTCCGAGCACTACATCGTGGACCCCCGACT
CGATGAGATAATGCGGAAGTTATCGGAAGGGAACTAAGGCCATCGATCGAGGGGCGGCGC
TGCTCCTCCTGCAGGAGTAGCATTCCGCCACTGCATGTTGATTTATTCAGCGTTGTTGTG
TCTCTTGTCTTTTCAGATCTGGATCGTGCGCTCGACCTAGTTGATGTAGATTGGTTGTTG
CAGTTCGTCTACCGTCCGTTTACATCGTTTCAGAGTTTTTCCTTCTGGCCTAGGCATAGC
TTTGGTCTTGTGTGAGTTTTCTATCTGTCCGCATGTTTAGTTGTGTTTGTATCAGTGTGG
CTGTGTGTATCCTATCTATGTATAGGTCATGAGTGTGCTTATTGTGTTTGTTTTTAGTTG
ATGCTTTGTTTCGAGTCAATAAAATTCATCCTTTGAGCGGCCGCTCGAGCATTTATCGAA
AGGGCCCAATTCGCCCTATA

Homology of Contig U35_21885 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None