barSeed - Barley Seed Development Database

Probe CUST_27526_PI390587928

Source Contig U35_16460

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27526_PI390587928	Hv_44K_v2	TTTTGCGGGTGCGTGTGGTACTCTTTGGACCATATATATTTACCGCTTTCTCTCAAAAAA	780	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.066	0.070	0.595	1.362	1.509	2.007
Raw	1397.506	2166.904	17689.757	59800.467	24205.533	35259.767

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13102.1	1698	3e-21	1058 - 1111	100	54 / 54	plus	ABC05005 ABC48509
JLOC1	JLOC1_8838.1	1407	2e-21	888 - 941	100	54 / 54	plus
Harvest21	ABC05005	932	3e-25	781 - 840	100	60 / 60	plus	ABC05005
Harvest21	ABC05006	450	2e-22	378 - 439	97	60 / 62	plus
Harvest35	U35_16460	932	3e-25	781 - 840	100	60 / 60	plus
Harvest35	U35_16461	450	2e-22	378 - 439	97	60 / 62	plus

Contig Sequence (932 bp)

>U35_16460 932 Hv_44K_v2
GGCTCATACAACACAGACAAGCAGGCGCTCCCCAGCTAGCTAGCTGGCTAGTTTTGCTGT
TGCTGCTCGACCTCACCGCCATCCTCCGGCCATGGCAGCCCATGTGGATCCCCTTGTGGT
TGGGAGGGTGATCGGTGACGTTGTGGACATGTTCGTGCCTAGCATGCCGGTGATCGTGCG
CTTCGGGACCAAGGACCTGACGAACGGCTGCGAGATCAAGCCGTCCATCGCCGTCGCGGC
GCCCTCGATCCAGATGGCCGGCCGGGCCAGCGATCTCTTCACCTTGGTTATGACTGATCC
GGATGCACCGAGCCCCAGCGAGCCAACCATGAAGGAGTGGCTTCACTGGCTGGTGGTTAA
CATACCTGGTGGAGCAGATCCTTCTCAAGGTGAGGAGGTGGTGCCCTACATGGGTCCGCG
GCCGCCGTTGGGCATCCACCGCTACGTGCTGGTGCTGTTCCAGCAGAAGGCGCGCGTGTT
GGCGCCGGCTCCCGGCGGGGACACGGCGGCGGCGTCGGCTATGCGCGCGCGGTTCAGCAC
CCGTGCCTTCGCAGAGCGCCATGACTTGGGGCTCCCCGTCGGCGCCATGTACTTCAACGC
GCAAAAGGAGCCGGCAAACCGCCGCCGCCGCTACTAGCTCGTCGCCCGCCGGCCGACCAA
ACCCGCTGCTGGTCCGTCCGTGCGTGCGTGCGCGCCGACCCAATAAATTAACCATCGACC
TTGTCGTTTGTCATGAACAAATCTCGGCTTGTATTGTGTGGTACTCTTTGTTGGTTTGTT
TTTTGCGGGTGCGTGTGGTACTCTTTGGACCATATATATTTACCGCTTTCTCTCAAAAAA
AAAAAAAAAAATATGGGTGAAATCCATGGCAGCGGCCGCGCAGTGTGAAGTACCTGTGGC
TGCATTTCTTTTGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16460 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g30370.1	177	1e-95	protein\|osMFT1 MFT-Like1 homologous to Mother of FT and TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed
Brachypodium v1_2	Bradi2g27860.1	182	1e-85
Arabidopsis v10	AT1G18100.1	173	6e-73	\| Symbols: E12A11, MFT \| PEBP (phosphatidylethanolamine-binding protein) family protein \| chr1:6228049-6230110 REVERSE LENGTH=173