- Probe CUST_27524_PI390587928
- Source Contig U35_16461
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27524_PI390587928 | Hv_44K_v2 | TTGCGGGTGCGTGTGGTACTCTTTGGACCATATATATTTACCGCTTTCTCTCTTAAAAAA | 379 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.068 | 0.072 | 0.612 | 1.372 | 1.548 | 2.052 |
| Raw | 1382.469 | 2140.472 | 17529.067 | 58196.167 | 24038.833 | 34832.733 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_13102.1 | 1698 | 3e-21 | 1060 - 1113 | 100 | 54 / 54 | plus | ABC05005 ABC48509 |
| JLOC1 | JLOC1_8838.1 | 1407 | 2e-21 | 890 - 943 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC05006 | 450 | 3e-25 | 380 - 439 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05005 | 932 | 6e-22 | 783 - 842 | 97 | 58 / 60 | plus | ABC05005 |
| Harvest35 | U35_16461 | 450 | 3e-25 | 380 - 439 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16460 | 932 | 6e-22 | 783 - 842 | 97 | 58 / 60 | plus |
Contig Sequence (450 bp)
>U35_16461 450 Hv_44K_v2 GACAAGCAGGCGCTCCCCAGCTAGCTAGCTGGCTAGTTTTGCTGTTGCTGCTCGACCTCA CCGCCATCCTCCGGCCATGGCAGCCCATGTGGATCCCCTTGTGGTTGGGAGGGTGATCGG TGACGTTGTGGACATGTTCGTGCCTTCGCAGAGCGCCATGACTTGGGGCTCCCCGTCGGC GCCATGTACTTCAACGCGCAAAAGGAGCCGGCAAACCGCCGCCGCCGCTACTAGCTCGTC GCCCGCCGGCCGACCAAACCCGCTGCTGGTCCGTCCGTGCGTGCGTGCGCGCCGACCCAA TAAATTAACCATCGACCTTGTCGTTTGTCATGAACAAATCTCGGCTTGTATTGTGTGGTA CTCTTTGTTGGTTTGTTTTTTGCGGGTGCGTGTGGTACTCTTTGGACCATATATATTTAC CGCTTTCTCTCTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_16461 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |