barSeed - Barley Seed Development Database

Probe CUST_27514_PI390587928

Source Contig U35_30759

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27514_PI390587928	Hv_44K_v2	TATACAGGGACTTCAAGGCGTCGAACGTGCTCCTGGACGGCGAGTTCCGGCCGAAGCTGT	4	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.460	0.800	1.050	1.361	0.819	1.661
Raw	5.160	14.737	17.997	33.489	7.336	17.968

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7274.2	2864	2e-24	1389 - 1448	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.1	1754	2e-24	1031 - 1090	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.3	2068	2e-24	965 - 1024	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.4	2329	2e-24	1226 - 1285	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.5	1966	2e-24	1253 - 1312	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.6	1798	2e-24	984 - 1043	100	60 / 60	plus	ABC17408
MLOC	MLOC_7274.7	1986	2e-24	1172 - 1231	100	60 / 60	plus	ABC17408
JLOC1	JLOC1_4795.3	1817	8e-25	1062 - 1121	100	60 / 60	plus
JLOC1	JLOC1_4795.2	1997	8e-25	922 - 981	100	60 / 60	plus
JLOC1	JLOC1_4795.1	2266	8e-25	1191 - 1250	100	60 / 60	plus
Harvest21	ABC30803	210	3e-25	5 - 64	100	60 / 60	plus
Harvest35	U35_30759	210	3e-25	5 - 64	100	60 / 60	plus

Contig Sequence (210 bp)

>U35_30759 210 Hv_44K_v2
GTGATATACAGGGACTTCAAGGCGTCGAACGTGCTCCTGGACGGCGAGTTCCGGCCGAAG
CTGTCGGACTTCGGGCTGGCGAGGGAGGGGCCGACGGAGGGGCGGACGCACGTGTCGACG
GCGGTGGTGGGCACGCACGGCTACGCGGCGCCCGACTACATCGAGACGGGCCACCTCACG
GTGAAGAGCGACGTGTGGGGGTTCGGGGTG

Homology of Contig U35_30759 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None