barSeed - Barley Seed Development Database

Probe CUST_27513_PI390587928

Source Contig U35_16466

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27513_PI390587928	Hv_44K_v2	GCCGGTTCTGAACTGCCTTTCAATCAAATTGTCATATACTAATAATCCGTCCATTGCATC	1179	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.354	3.159	1.184	0.661	0.228	0.199
Raw	3900.983	5490.470	1889.287	1664.905	198.238	191.934

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21909.1	1105	2e-24	936 - 995	100	60 / 60	plus	ABC05534
MLOC	AK367840	996	7e-23	940 - 996	100	57 / 57	plus	ABC05534
JLOC1	JLOC1_15192.1	1140	8e-25	935 - 994	100	60 / 60	plus
Harvest35	U35_16466	1301	3e-25	1180 - 1239	100	60 / 60	plus

Contig Sequence (1301 bp)

>U35_16466 1301 Hv_44K_v2
GCCTCACCCGCACGCCATTCCCCGCCGTTCCAATCCCCCGCGCGATTAAAAATCCAACAA
GCCGCAGTATTCTATCCCCATCCCGCCCCCCACCCCCTCTCCCTCCTCCGCGCGCCCTCG
CCCCCGCACCAAGGCCGCACTCCAAAGCAACCGCCCGTCGCTATCGCCATCGGCGACCCC
GCCTTCCCGGGCACGGAACCCTAGCGCGCTATAAGAGCACCTGCGCACCCATGGCGCCCG
CGGCAGCATCGGCATCGGCATCCATCGCCGCCATCGCCCAGCACCACGCACCCGCGGCCC
CGCGCGCCTCCGTCTCCGTCGCCGCCGCCGGGAGGAACGGCGGCCTTTCCGTGTCGGTAG
GCGTGCGCCCCGTGCCGGGGATCTCCGTGGTCAACTCGCAGCGGAGGAGGATGGTCGCGG
CGGCGGCGGCCACCGAGATGGCGCCCGCGGCCAGGGGCGAGGGCGGGGGGAAGCCGTTCG
TGGACGAGATGAGGGCCGTCGCCATGCGCCTGCACACCAAGGACCAGGCCAGGGAGGGGG
AGAAGGAGCCCCAGGCGCCCCCCGTCGCCAGGTGGGAGCCCACCGTCGAGGGCTACCTGC
GCTTCCTCGTCGACAGCAAGCTCGTCTTCCAGACCCTCGAGGACATCGTCGACCGCGCCG
CCGTCCCCTGGTATGCGGATTTTAGGAATACTGGGTTAGAGAGATCAGAGCCACTGAAGA
AAGATCTGGAATGGTTCACGGAACAGGGTCACACCATTCCAGAACCAACTGCTGCTGGTA
CTGCATATGCTTCCTATCTGGAAGAGTTGTCTGAGAAGGACCCCCAAGCATTTATCTGCC
ACTTCTATAATGTGTACTTTGCTCATACTGCTGGAGGCCGAATGATTGGCAAAAAGGTTG
CTGAGAAGATTCTGAACAAGAAAGAGCTGGAGTTCTACAAGTGGGAAGGTACCCTGTCTC
AGCTGCTGCAGAATGTCCGCACCACACTAAACCAAGTTGCTTCTAGCTGGTCTCGGGAAG
AGAAGGACCACTGCCTGGAGGAGACCGAGAAGTCGTTTGCCTACTCAGGGGACCTCCTAC
GCCAGATATTCACCTGAGCCAAGAACGATCTCCATTACGTTTCACGATGAACATTGTAAA
TACTAAGCCATGTCTGTGCACCGGGGAGGAACATGCTCTGCCGGTTCTGAACTGCCTTTC
AATCAAATTGTCATATACTAATAATCCGTCCATTGCATCAAAAAAAAAAAAAAAAGTCTT
TGCCCTTTGCCTTTTGCTGATCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_16466 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40080.1	290	5e-133	protein\|heme oxygenase 1, putative, expressed
Brachypodium v1_2	Bradi1g36640.1	280	1e-150
Arabidopsis v10	AT2G26670.1	282	7e-106	\| Symbols: HY1, ATHO1, HO1, TED4, GUN2, HY6 \| Plant haem oxygenase (decyclizing) family protein \| chr2:11341816-11343394 FORWARD LENGTH=282