barSeed - Barley Seed Development Database

Probe CUST_27512_PI390587928

Source Contig U35_16467

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27512_PI390587928	Hv_44K_v2	CTTTCATGTAATGGGTATTTTGCATTGTACACTCCCTCCATTTTTATATACAATGTCACC	2362	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.457	2.118	0.943	0.768	0.942	0.839
Raw	18.213	24.909	9.304	10.010	2.679	2.623

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65944.1	3446	2e-24	3345 - 3404	100	60 / 60	plus	ABC05572 ABC19896
JLOC1	JLOC1_43432.1	3505	8e-25	3384 - 3443	100	60 / 60	plus
Harvest21	ABC05572	2460	3e-25	2363 - 2422	100	60 / 60	plus	ABC05572
Harvest35	U35_16467	2457	3e-25	2363 - 2422	100	60 / 60	plus

Contig Sequence (2457 bp)

>U35_16467 2457 Hv_44K_v2
CACAGCTCTTAAGAACATCGGAATCGATGAGCGTCTTCCATACAATGCCCCTCTCATTCA
GTTCTCTTCTTGGATGGGTGGTGACCGTGATGGAAATCCCAGGGTCACACCAGAAGTGAC
AAGGGATGTGTGTCTGTTGGCCAGAATGATGGCTGCTAACTTGCACTTCTCACAGATAGA
GGAGCTCATGTTTGAGCTCTCGATGTGGCGATGTAACGATGAACTCCGCGTCCGCGCTGA
GGAACTACACCGCGCTTCAAGGAAAGCTGAAAAACATTACATAGAGTTCTGGAAGCAAGT
TCCCCCAACTGAACCTTACCGTGTGATACTGGGCTATGTACGGGACAAACTGTACTACAC
ACGCGAACGCTCCCGCCATCTTCTGACGAGTGGATCTTCTGACATCCCCGCGGACTCCAC
CTTCACTGATGTCGAGCAGTTTCTGGAGCCCCTCGAGCTGTGTTACCGGTCACTGTGCGA
TTGCGGCGACAAGACCGTCGCCGACGGGAGCCTCCTCGACTTCCTGCGCCAGGTGTCCAC
CTTCGGCCTCTCCCTCGTCAAGCTCGACATCCGGCAGGAGTCCGACCGGCACACCGACGC
GCTGGACGCGATCACCGCGCACCTCGGCATAGGCTCGTACCGCTCGTGGCCCGAGGAGAA
GCGGCAGGAGTGGCTGCTGTCGGAGCTGAGGGGCAGGCGCCCGCTGTTCGGCGGCGACCT
TCCAATGACCGAGGAGGTGGCCGACGTCCTCGGCACGTTCCGCGTCCTCGCCGAGCTCCC
GCCGGACTGCTTCGGCGCCTACATCATCTCCATGGCGACGGCGCCGTCCGACGTGCTCGC
CGTAGAGCTCCTCCAGCGGGAGTGCAAAGTGGGGCACCCCCTCAGGGTGGTCCCGCTGTT
CGAGAAGCTGGCCGACCTGGAGGCGGCGCCCGCGGCCGTCGCGCGGCTGTTCTCGATCGA
CTGGTACATGGACCGGATCGGCGGCAAGCAGGAGGTCATGATCGGCTACTCCGACTCCGG
CAAGGACGCCGGCCGCCTGTCCGCGGCGTGGCAGCTGTACAAGGCGCAGGAGGAGCTGGT
CAAGGTGGCGAAGCAGTACGGGGTGAAGCTGACCATGTTCCACGGGCGAGGCGGCACGGT
CGGCAGGGGCGGCGGGCCGACCCACCTGGCCATACTGTCCCAGCCGCCGGAGACGGTGAA
CGGGTCGCTCCGGGTGACGGTGCAGGGCGAGGTGATCGAGCACTCGTTCGGCGAGGAGCA
CCTCTGCTTCCGGACTCTGCAGCGGTTCACGGCGGCCACCCTGGAGCACGGCATGCACCC
GCCGGTCTCCCCCAAGCCCGAGTGGCGCGCCCTCATGGACGAGATGGCCGTCGTGGCCAC
CGAGGAGTACCGCGCCATGGTCTTCAAAGAACCGCGATTCGTCGAGTACTTCAGATCGGC
GACGCCTGAGACAGAGTACGGCAGGATGAACATCGGCAGCCGGCCGTCGAAGAGGAAGCC
GAGCGGCGGCATCGAGACGCTGCGCGCCATCCCGTGGATCTTCGCGTGGACGCAGACGAG
GTTCCACCTCCCCGTGTGGCTCGGGTTCGGCGCCGCGTTCAAGCACATCATGCACAAGGA
CATCAGGAACATCCAGGCTCTCAGGGAGATGTACAACGAGTGGCCCTTCTTCAGGGTCAC
GCTGGACCTGCTGGAGATGGTGTTCGCCAAGGGAGACCCCGGCATCGCCGCGCTCTACGA
CGAGCTGCTTGTCGCCGACGAGCTCAAGCCCCTCGGGGAGCAGCTCAGGAGCAACTTCGA
GGACACCAAGAAGCTGCTCGTCCAGGTTGCTGGCCATAGGGACGTTCTTGAAGACGACCC
GTACCTGAAGCAGCGGCTGCGGCTGCGTGACCCCTACATCACCACCCTGAACGTGTGCCA
GGCCTACACGCTGAAGCGGATCCGGGACCCCAGCTTCCAGGTGACGGCGCAGCCGCCGCT
GTCCAAGGAGTTCGCCGACGAGAACCAGCCGGCGTCGCTGGTGAAGCTCAACGCGGCGAG
CGAATACGCGCCGGGGCTGGAGGACACGCTCATCCTCACCATGAAGGGCATCGCCGCCGG
CATGCAGAACACGGGCTAGATTCAGATTGCCGAGGTTTTTGCTGTGTGCTTAAATGTTAA
ATCTGCGGAGTGCTGAAGGTACCAGCTACCTCTGGATTTCTGAGTTCCCCCGGGAGGTGG
CCGGGTGAGTGCGCCTTCGTTTTGTTTTGAGAAATAAAAATAAAATCGTGAAAATAATGT
ATAGATGCGTGACTGATGTATACAGTAATAAACAGTATAAGATCTTCTGTGCGGCTAATG
GCACATAAACTCAATATATACTCTTTCATGTAATGGGTATTTTGCATTGTACACTCCCTC
CATTTTTATATACAATGTCACCTTTATTTGTTTAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16467 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g14770.2	969	protein\|phosphoenolpyruvate carboxylase, putative, expressed
Brachypodium v1_2	Bradi1g39167.1	974
Arabidopsis v10	AT1G53310.1	967	\| Symbols: ATPPC1, PEPC1, ATPEPC1, PPC1 \| phosphoenolpyruvate carboxylase 1 \| chr1:19884261-19888070 REVERSE LENGTH=967