barSeed - Barley Seed Development Database

Probe CUST_27511_PI390587928

Source Contig U35_16468

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27511_PI390587928	Hv_44K_v2	GTAGCCTGAATAATGTACAGTATTTTTGGTTGCTCAATGATTGTAAAGTCGTCTGAGTAA	2209	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13604.2	3818	2e-24	10 - 69	100	60 / 60	minus	ABC05244
MLOC	MLOC_13604.1	6699	2e-24	30 - 89	100	60 / 60	minus	ABC05244
JLOC1	JLOC1_9221.3	6666	8e-25	6582 - 6641	100	60 / 60	plus
JLOC1	JLOC1_9221.2	6685	8e-25	6601 - 6660	100	60 / 60	plus
JLOC1	JLOC1_9221.1	5873	8e-25	5789 - 5848	100	60 / 60	plus
Harvest21	ABC05244	2286	3e-25	2210 - 2269	100	60 / 60	plus	ABC05244
Harvest35	U35_16468	2286	3e-25	2210 - 2269	100	60 / 60	plus

Contig Sequence (2286 bp)

>U35_16468 2286 Hv_44K_v2
GCGATCATGGATGTGAGTACATGACAGGGGGTATTGTAGTCATCCTTGGTAAAACAGGAA
GAAATTTTGCTGCTGGGATGAGTGGAGGCATCGCTTATGTTTATGATGTTGATGGGACAT
TCAGTGCACGCTGTAACCCTGAGTTAGTTGATCTATATCATTTGGAGGAAGAGGATGATA
TAACCACTTTGAAAATGATGATAGAGCAACATCGACTTCACACAGAGAGTGTCCTGGCTA
AAGACATCCTCTCTAAATTCGACAGCCTTCTTCCAAAATTTGTAAAAGTATATCCAAGGG
ATTATAAGAGGGTTCTGGAAGAAATGAAGGCAGAAAAGGCTGCAGCTAGGTCTACAAAGG
AACCTAAGGTGGCAAATGGTGTTTCTGTGACAACTAAGAAAATACAAACAGAGAAGTCAT
CCAGCCGACCAACACGTGTTGCCAATGCCAAAAAGTACCGGGGTTTTATAACATATGAGC
GAGAGGGTGTTTCTTACCGTGATCCAAATGAGCGTGTTAAAGATTGGAATGAGGTTGCCA
TTGAGTCAGTTCCAGGGCCACTGATAAGTACACAGTCTGCTCGTTGCATGGATTGTGGCA
CTCCTTACTGTCATCAGGAAAGCTCAGGTGCTGGTTGTCCCCTTGGAAATAAGATCCCAG
AGTTCAATGAATTAGTTCACCAGAATAGATGGCGTGAAGCATTGGATCGCCTACTCGAGA
CAAACAACTTCCCTGAATTTACTGGACGTGTGTGCCCTGCTCCTTGTGAGGGTTCTTGTG
TTCTTGGCATTAATCAGAACCCAGTATCAATCAAAAGCATAGAATGCTCAATTATAGACA
AGGGTTTTGAAGAGGGATGGATGGTACCACGACCACCACTTCAAAGAACAGGAAAGAAAA
TTGCTATAGTTGGCAGTGGTCCTGCTGGTTTGGCCGCTGCTGATCAACTAAATAAAATGG
GCCATTTTGTAACAGTATTTGAACGTTCAGATCGTATAGGAGGTCTTATGATGTATGGAG
TACCAAACATGAAGACAGACAAGATTGGTGTTGTCCAACGCCGTGTCAATTTAATGGCCG
AAGAGGGTGTAACATTTGTGGTGAATGCTAATGTAGGGAGTGATCCTTTGTACTCAATTG
AACGTCTCCGTTCTGAGAACAATGCAGTTATTTTGGCTTGTGGAGCCACAAAACCAAGGG
ACCTCAGTATTCCTGGCCGTGATCTAGCTGGAGTTCATTTTGCCATGGAATTTCTCCACG
CAAATACCAAAAGCTTGCTTGATAGCAACTTGGAGGACGGAAGATACATATCTGCCCAGG
GGAAGAAGGTGGTGGTCATTGGTGGTGGAGACACAGGCACAGATTGCATCGGTACATCTG
TTAGGCATGGTTGCAGCAGGGTTGTAAATCTGGAGCTTCTTACCAAACCACCAAGCAAGA
GAGCTGCTGACAACCCCTGGCCCCAGTGGCCTAGAGTCTTCCGAGTGGACTATGGACATC
AGGAAGCATCTACCAAGTTTGGAAATGATCCAAGGACTTACGAAGTCTTGACCAAGCGTT
TCATTGGTGATGAAAATGGAAAATTAAAGGCCCTTGAGGTGGTGCGTGTGAAGTGGGAGA
AAGTAGATGGAAGGTTCCAATTCAAGGAGATTGAAGGATCACAAGAGATCATCGAGGCAG
ACCTTGTTCTCCTTGCCATGGGATTCCTGGGCCCTGAGGAGAAAATCGCTGACCAATTGG
GTTTAGAGAAAGACAACCGGTCCAACTTCAAAGCTCAATTTGGACACTTCGCGACCAGTG
TGGATGGCATTTTCGCTGCTGGGGATTGCAGGCGTGGGCAATCACTGGTTGTTTGGGCCA
TCACTGAAGGACGTGAAGCTGCTGCCGCGGTTGACAAGTACTTGTCAAGGGATGAACAAA
ATGCCGCAGAAGGCATCACTGCCTTGGGTGCAGGTCTGGTTCAGCGAATTGCTGCATAAA
TATCGCAGGCCTTGCATAGGTTTGTGGTGCTGGTAGCAACATAATTTAGGATTGGTGATT
TTATCTATTGGTGATAGCAAATTGTGCTAAGGCTGGGCTCAATAGGGAAAGAAAGAGAGG
GCCCTTTTATACTTGGGGATAGGCATACCATGGAAAATTTTGGTTGGCTATTGTTTGTTG
GTTTATTGTCTAGCTATAATATTTTGATTCGCTGCCTAAATGCGGCTTTGTAGCCTGAAT
AATGTACAGTATTTTTGGTTGCTCAATGATTGTAAAGTCGTCTGAGTAATATGGAGTATT
ACTTTT

Homology of Contig U35_16468 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g48960.1	2168	protein\|glutamate synthase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g46670.1	2164
Arabidopsis v10	AT5G53460.1	2208	\| Symbols: GLT1 \| NADH-dependent glutamate synthase 1 \| chr5:21700518-21709629 FORWARD LENGTH=2208