barSeed - Barley Seed Development Database

Probe CUST_27507_PI390587928

Source Contig U35_42733

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27507_PI390587928	Hv_44K_v2	TAATCTTGGGCAACACTATTATATTCAACGCAGGTTTGATCAAGCTCAAACATGTTTTGA	543	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.934	1.245	1.240	0.991	0.696	0.598
Raw	116.797	228.484	208.009	249.207	67.356	60.644

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16386.1	1577	2e-24	1282 - 1341	100	60 / 60	minus	None
MLOC	MLOC_16386.2	1577	2e-24	1282 - 1341	100	60 / 60	minus	None
MLOC	MLOC_16386.3	1606	2e-24	1282 - 1341	100	60 / 60	minus	None
JLOC1	JLOC1_11278.1	337	8e-25	253 - 312	100	60 / 60	plus
Harvest21	ABC38586	606	3e-25	544 - 603	100	60 / 60	plus
Harvest35	U35_42733	606	3e-25	544 - 603	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_42733 606 Hv_44K_v2
GGCGCCGCCTTCGAGGAGCTTCAGCTTGCCCCGCGCGGCCGCCGGCGCGGCCTCCACCTC
AGGTTCCAGTGATGGTCACTTCAGTTGTAAGGGCTCAACATACGCCGCTATACTGATTGG
GCAAGCAGCTGTTGTTCTTGGCCTGAGCAGCAACTCTGTATTGGCTCAGGATGATTCGAC
CGCTCCAGCAGTTACAAGTGGGGAAGCTGATGTAAATGTTACTGGCCTACGTCGTATTGA
AGATGGTTCGGTGATCTCCAATGAACACACGATCAAATGGAGAATGTGCACTGATAAAGC
ACGAGAGTATTTCCTGCAAGGAAAACTAGATGAAGCTGAGAAGTTATTCAAGGCAGCCCT
GCAAGAAGCTAAAGAAGGATTTGGACTCAGAGATCCACATTCTGCATCGGCTCTGAACAA
CTTGGCAGAGTTTTATAGGCTAAGGAAAGAGCATGAGAAAGCTGAGCCGTTATATCTGGA
AGCGATTGAAATCTTGGAGCAATCATTTGGACCTGATGATATACGGGTTGGAGCTGCTTT
CCATAATCTTGGGCAACACTATTATATTCAACGCAGGTTTGATCAAGCTCAAACATGTTT
TGAGCG

Homology of Contig U35_42733 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi1g69500.3	535	7e-92
Arabidopsis v10	AT5G37590.1	551	3e-61	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:14927403-14932709 REVERSE LENGTH=551