barSeed - Barley Seed Development Database

Probe CUST_27506_PI390587928

Source Contig U35_42734

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27506_PI390587928	Hv_44K_v2	TAAGCGCTATTCCTTCCCTGGCTGCGGCTTCGCAGGGTACGAGAGTGTCTGTGGCAGCTG	310	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55491.2	2016	7e-23	1262 - 1321	98	59 / 60	minus	ABC38589
MLOC	MLOC_55491.1	1700	7e-23	1296 - 1355	98	59 / 60	minus	ABC38589
JLOC1	JLOC1_35804.1	1443	4e-23	1247 - 1306	98	59 / 60	minus
Harvest21	ABC38588	394	3e-25	311 - 370	100	60 / 60	plus
Harvest35	U35_42734	394	3e-25	311 - 370	100	60 / 60	plus

Contig Sequence (394 bp)

>U35_42734 394 Hv_44K_v2
GAAAAAAAACTGCAATCGCACCGCAGCCAGAGCGGCGGACTGCTCACCGGCGCGGCGCGG
CGCGGACGGCCAATCAACCCCGCCCCCGGAGCGATCCCCCCGGACTCATGGAAGCAGACC
GGTCGCCGTGGTTAGACCTGCCGCTGGACATAGCAGGCCTGGTGTTCAGCCTGCTCGCCC
AGTACGCCGACCGCGCCGCCTTTGCTCTGGTGTGCCCGCAGTGGCGTGCCGCCGCGTCGC
GGAAGGGCCTGCCCCCATCGCTGCCGGTGCTCGCGCTCCCAGACGGCACCTTCTTCAGCA
TCTTCTACCCTAAGCGCTATTCCTTCCCTGGCTGCGGCTTCGCAGGGTACGAGAGTGTCT
GTGGCAGCTGGCTCGTCTTCCCACGCGACGACGG

Homology of Contig U35_42734 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None