- Probe CUST_27504_PI390587928
- Source Contig U35_42735
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27504_PI390587928 | Hv_44K_v2 | AGCCGTGAAATGCATTAGTAGTATTGCTACTATCTATCTGAACTTTGTTACTCTGTTAAG | 32 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.216 | 1.225 | 1.443 | 1.004 | 0.311 | 0.313 |
| Raw | 154.225 | 245.792 | 247.759 | 271.700 | 28.308 | 33.114 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55491.2 | 2016 | 2e-24 | 95 - 154 | 100 | 60 / 60 | minus | ABC38589 |
| MLOC | MLOC_55491.1 | 1700 | 2e-24 | 129 - 188 | 100 | 60 / 60 | minus | ABC38589 |
| JLOC1 | JLOC1_35804.1 | 1443 | 8e-25 | 80 - 139 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC38589 | 458 | 3e-25 | 33 - 92 | 100 | 60 / 60 | minus | ABC38589 |
| Harvest35 | U35_42735 | 458 | 3e-25 | 33 - 92 | 100 | 60 / 60 | minus |
Contig Sequence (458 bp)
>U35_42735 458 Hv_44K_v2 TTTTTTTTTTTTTTTTTGATTAACAAACAGCACTTAACAGAGTAACAAAGTTCAGATAGA TAGTAGCAATACTACTAATGCATTTCACGGCTTGTAGGGGAACCAGTGAACACTATGTCA ACCACCAAATATACCACCATCAGATAGATAACCCTATGAGCAGGTTGCAGAATAACCCGG AACAACAACAACTATAGAATGGCCAGATAACTTGGGAGCAGCTTGCATATATATAGCATT ATGACACATTCCCATCAGTCCTGAGGGAATAGCCATGCAGCCAGACGCATCTCATCGCAA CGTTTCCAGAAAATATATGGATGAGGGAAATGGACAGCGTTGGATCTCATTCCATAGCCG CCGAACGAAGTGTCCTCATTGTCGTAGCAGTAGTCCATACGATTCTCCTCATCATCATCC AAGAAGAAGATATAATCACCCAACAGCCCGTCGTACTG
Homology of Contig U35_42735 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |