barSeed - Barley Seed Development Database

Probe CUST_27503_PI390587928

Source Contig U35_28442

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27503_PI390587928	Hv_44K_v2	CTCTTACTCTTCATGTCAGGAAGCATGCAATACTAAAGCCAATGATGCTGCCTCCACTTC	396	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.117	1.388	2.010	0.936	0.700	0.609
Raw	12.604	23.092	30.886	22.162	4.842	4.753

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356573	3164	2e-24	1292 - 1351	100	60 / 60	plus	None
MLOC	MLOC_67317.1	2337	2e-24	1837 - 1896	100	60 / 60	minus	None
JLOC1	JLOC1_44437.1	2339	8e-25	451 - 510	100	60 / 60	plus
Harvest21	ABC27312	488	3e-25	397 - 456	100	60 / 60	plus
Harvest35	U35_28442	488	3e-25	397 - 456	100	60 / 60	plus

Contig Sequence (488 bp)

>U35_28442 488 Hv_44K_v2
GACGCAGAGAGGAAAGGCTCATTCAGCTCATCACATATCGGAACAAAGGGCTGAACTGTC
AAAATTTCTACCAGGAAGGACGGACAATGCAATAAAAAATCATTGGCACAGCTCAGTTAA
GAAGAAATATGAATCATATAGAGCAGAAGGATTACTAGCTCAGTTCCAGGGCCTACCAGC
TGTTGTATGTCCTACAGGGAGTCTAAATGTTGATTCATCATCTGCAATGACGCAGCAAAA
TAGTGATGGCAGTGGTTTGAATGTTAATCAGGCGGTAGAAGATTCCTCCGATTTTAGTCA
ATCAGCATTGGCTAATGTTTCTTCTTCTCAAGTGGAGCAAGTTGATGAGGCTGGGGGCTG
TCATGGGCAAATACATTCCAGTGATGGAACACATGACTCTTACTCTTCATGTCAGGAAGC
ATGCAATACTAAAGCCAATGATGCTGCCTCCACTTCACCGGAGACTCGTCACCAGTTGTT
GATCTCTG

Homology of Contig U35_28442 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g31887.1	926	2e-58
Arabidopsis v10	None