- Probe CUST_27501_PI390587928
- Source Contig U35_28443
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27501_PI390587928 | Hv_44K_v2 | AATCTTATTCGACAAAGAGCCATTAAAAAGCCTCCATCGCTTCAAAGATGCCTTCGGTAT | 149 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.471 | 1.095 | 1.071 | 0.843 | 0.693 | 0.589 |
| Raw | 264.206 | 288.007 | 261.319 | 290.708 | 93.565 | 87.827 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366112 | 2962 | 2e-24 | 749 - 808 | 100 | 60 / 60 | plus | ABC08403 |
| MLOC | MLOC_71026.5 | 3064 | 2e-24 | 832 - 891 | 100 | 60 / 60 | plus | ABC08403 |
| MLOC | MLOC_71026.6 | 2635 | 2e-24 | 657 - 716 | 100 | 60 / 60 | plus | ABC08403 |
| MLOC | MLOC_71026.2 | 1837 | 2e-24 | 777 - 836 | 100 | 60 / 60 | plus | ABC08403 |
| MLOC | MLOC_71026.7 | 3208 | 2e-24 | 908 - 967 | 100 | 60 / 60 | plus | ABC08403 |
| MLOC | MLOC_71026.1 | 3152 | 2e-24 | 741 - 800 | 100 | 60 / 60 | plus | ABC08403 |
| MLOC | MLOC_71026.4 | 2937 | 2e-24 | 733 - 792 | 100 | 60 / 60 | plus | ABC08403 |
| MLOC | MLOC_71026.3 | 2539 | 2e-24 | 561 - 620 | 100 | 60 / 60 | plus | ABC08403 |
| JLOC1 | JLOC1_47169.6 | 3214 | 8e-25 | 754 - 813 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47169.5 | 2955 | 8e-25 | 495 - 554 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47169.4 | 3021 | 8e-25 | 561 - 620 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47169.3 | 3299 | 8e-25 | 839 - 898 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47169.2 | 3195 | 8e-25 | 735 - 794 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47169.1 | 3134 | 8e-25 | 674 - 733 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27313 | 608 | 3e-25 | 150 - 209 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28443 | 608 | 3e-25 | 150 - 209 | 100 | 60 / 60 | plus |
Contig Sequence (608 bp)
>U35_28443 608 Hv_44K_v2 CGGCAGGGGGNAACATGGNTGTGGNATTCAGTTACACCAGGTCCACANAACAGACGTGCG GTCAGAAGTCAAGAGCTCAGCTATCTCCAGATGATGAACTTACCGCTAAGGAAAGTTTAG CATTATACTGCAAGCCAGTTGAGCTGTACAATCTTATTCGACAAAGAGCCATTAAAAAGC CTCCATCGCTTCAAAGATGCCTTCGGTATAAGATAGATGCAAAACGAAAAAAGAGGATTC AGATATCAGTATCAATTTCTCGAAGCACACATACTCAATTGCCAGCACATGGTATCTTTC CTCTCCATGTTCTGTTAGCTAGATCTAGTAAGGATGTTCCAGGTGAAGGGCATTCTCCAA TGTATCGGTTCAGCCGGGCTTTTGTCCTGACTTCCTTCCGTGAATCTGGAGATAGTGACC ACACTGAAGCCACATTCACCGTCCCCAATATGAAGAATTTGTCGACCTCCCAAGGTTCCA GCGTCAACATTATCCTTGTTAGCTGTGGCCGAGGTGGACAGAATCTTGGTGAAAACTGCT CAGAGAACCATACGGAGTATTCTTCTCCTCAAAAGCTTGGAGGCCAATGTTTCTGGGGTA AAATATCA
Homology of Contig U35_28443 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g13630.1 | 605 | 4e-70 | protein|ZOS9-03 - C2H2 zinc finger protein, expressed |
| Brachypodium v1_2 | Bradi3g03106.1 | 647 | 1e-74 | |
| Arabidopsis v10 | None |