- Probe CUST_27500_PI390587928
- Source Contig U35_28444
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27500_PI390587928 | Hv_44K_v2 | TGGAAAAGGTCAATTCGGATCTCGACAAGGTTAAGAACCACCCAGAAGTGATGGAAAAAG | 371 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 24.765 | 11.114 | 0.991 | 0.552 | 0.585 | 0.915 |
| Raw | 314.551 | 189.729 | 15.928 | 13.904 | 4.698 | 8.542 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364711 | 2372 | 7e-23 | 277 - 336 | 98 | 59 / 60 | plus | ABC06446 ABC08806 ABC08809 ABC10717 ABC36750 |
| MLOC | MLOC_4591.1 | 1391 | 7e-23 | 675 - 734 | 98 | 59 / 60 | plus | ABC08806 ABC08809 ABC31768 |
| MLOC | MLOC_4591.2 | 3200 | 7e-23 | 2443 - 2502 | 98 | 59 / 60 | plus | ABC08806 ABC08809 ABC31768 |
| MLOC | MLOC_4591.5 | 1429 | 7e-23 | 901 - 960 | 98 | 59 / 60 | plus | ABC08806 ABC08809 |
| JLOC1 | JLOC1_2881.2 | 1218 | 4e-23 | 477 - 536 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_2881.1 | 1347 | 4e-23 | 606 - 665 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC27314 | 435 | 3e-25 | 372 - 431 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC08809 | 970 | 1e-23 | 666 - 725 | 98 | 59 / 60 | minus | ABC08809 |
| Harvest21 | ABC08808 | 687 | 1e-23 | 474 - 533 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_28444 | 435 | 3e-25 | 372 - 431 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3159 | 687 | 1e-23 | 474 - 533 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_3157 | 1398 | 1e-23 | 246 - 305 | 98 | 59 / 60 | plus |
Contig Sequence (435 bp)
>U35_28444 435 Hv_44K_v2 GCAGCATTCGGCACGTGGTAGCTGTCACCCTCCTGCCCTGCCCTACCAGCACTTGTGCAG TCTCTGTATATATAGTGCCCAGCCCAAGACATTATTAGCCTGCTTCTCTTGGTCCAGATC AAGGAGCTCCGTTAGAGCCCTGGTCCGACTCGGAGATCCCAACCCAGAATTCTTGAGCTC CTCATACAAATTATTAGGTCGTGCTTTTCGGCTTGCTTCTGTCTCCTTAGCTTTCCCCAT TTATTGTCTGCGAAATCTGAAGATTCCAACTGGTCAAGGAAGTGAAGAAGAACAAGGAGA GAAGGACATGGATGCTTTAAGTTCGATGCTCGACAAGGCGAAAGACAAGGTGAAAAGCAA CCCTGATGTGATGGAAAAGGTCAATTCGGATCTCGACAAGGTTAAGAACCACCCAGAAGT GATGGAAAAAGTTGC
Homology of Contig U35_28444 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |