barSeed - Barley Seed Development Database

Probe CUST_2749_PI390587928

Source Contig U35_9176

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2749_PI390587928	Hv_44K_v2	AAGCTGCACTTAGGGCTGGCAGGCATATGCTAAGATCTGGATTTCATGTTACACCAATTC	629	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54280.2	1662	2e-24	1206 - 1265	100	60 / 60	plus	ABC20008
MLOC	MLOC_54280.1	1548	2e-24	1142 - 1201	100	60 / 60	plus	ABC20008
MLOC	MLOC_54280.5	1562	2e-24	1098 - 1157	100	60 / 60	plus	ABC20008
MLOC	MLOC_54280.3	1625	2e-24	1163 - 1222	100	60 / 60	plus	ABC20008
JLOC1	JLOC1_34933.9	1524	8e-25	900 - 959	100	60 / 60	plus
JLOC1	JLOC1_34933.8	1937	8e-25	1313 - 1372	100	60 / 60	plus
JLOC1	JLOC1_34933.7	1631	8e-25	1007 - 1066	100	60 / 60	plus
JLOC1	JLOC1_34933.6	1591	8e-25	967 - 1026	100	60 / 60	plus
JLOC1	JLOC1_34933.5	1622	8e-25	998 - 1057	100	60 / 60	plus
JLOC1	JLOC1_34933.4	1548	8e-25	924 - 983	100	60 / 60	plus
JLOC1	JLOC1_34933.3	1640	8e-25	1016 - 1075	100	60 / 60	plus
JLOC1	JLOC1_34933.2	1635	8e-25	1011 - 1070	100	60 / 60	plus
JLOC1	JLOC1_34933.1	1778	8e-25	1154 - 1213	100	60 / 60	plus
Harvest21	ABC20008	1192	3e-25	630 - 689	100	60 / 60	plus	ABC20008
Harvest35	U35_9176	1192	3e-25	630 - 689	100	60 / 60	plus

Contig Sequence (1192 bp)

>U35_9176 1192 Hv_44K_v2
ACCCGCAAAGGACGAGAGAATTGCTATTTTTTCAGATGCTCTGAATCATGCTTCAATCAT
CGATGGGATTCGCCTTATTGAGCGTCAGCAAGAAGCTGTAGTGTTTGTCTACAAGCACTG
TGACATGTCTCATCTTGATTTCCTCCTGTCCAGTTGCTCAATAGAAAAGAAAGTTGTTGT
CACAGACAGCTTGTTTAGCATGGATGGTGATCTTGCTCCATTACCTGAACTTGTGGAACT
ACGTAGGAAGTATGGATTTTTATTGGTCATCGATGATGCCCATGGAACACTTGTTTGTGG
TGATAATGGTGGTGGTGTACCCGAGCTGCTTGAATGTGAGAGTGGAATTGACATAAGTGT
TGGCACCTTAAGCAAGGCTGCTGGCTGCCAGGGTGGGTTTGTAGCATGCAGCACCCGATG
GAAGAGTTTAATTCAGTCGCGAGGTCGCTCGTTCATTTTTTCTACTGCTTTGCCAGTGCC
AGTAGTTGCTTCTGTTCAAGCGGCGCTCCATGTCTCAAGGAAGGAAAGATGGCGGAGATC
ATTGGTCTGGAGGCATGTGCAGTATTTTGCATCCTTGACTAAACTCAATATAACTAGTCC
CATAATTTCCATAGTAGTAGGAAGTGAAGAAGCTGCACTTAGGGCTGGCAGGCATATGCT
AAGATCTGGATTTCATGTTACACCAATTCGACCACCCACCGTGCCGCCCAACTCATGCAG
GCTGCGAATAACTTTGAGTGCTTCTCATTCCTCGGATGACATCAAGAGGCTGGTCAATGC
GCTCACTCCCTGGCTATCTGGCAAACATGCCAAACAGAATTTTGTGGAGGGGCATGCTGA
GCAGAGCTATGTCGCGGCATCAAAACTTTAAGCAGCATGAACTGAAGCTTGTAGGCGGGG
ACACTAGATGTGCTGGAATACGTGGGAGAAAACGCTCACGGAGAAATAACTCGGTAGATG
TTGATGTGATCATTTGTGTCCATTTCACACGCGACAAAAGTGTTTCCATAATTGGTATAT
ATGGTCTTGTGAGGCATACTACCCTGAAAGATACTATTGATGTAGAGATGGATTTGGGTA
ATTTCCATATTGAGAGCTTGAGACTGTTCTGTAACCGGAAACATCCTTGATGCCGTGATG
TAAGTATAGGCTACCGAATTGCCGGTAAACAACGGCCTGTTTGGGATGCAGG

Homology of Contig U35_9176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53450.2	342	2e-172	protein\|aminotransferase, classes I and II, domain containing protein, expressed
Brachypodium v1_2	Bradi3g33370.1	351	0.0
Arabidopsis v10	AT5G04620.2	476	4e-127	\| Symbols: ATBIOF, BIOF \| biotin F \| chr5:1327292-1329934 FORWARD LENGTH=476