- Probe CUST_27498_PI390587928
- Source Contig U35_28445
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27498_PI390587928 | Hv_44K_v2 | TAACTTCACCAATGTGAGCGTCGATGCTGAGATTGTTGGACAAGATGAATTGGATAACGG | 427 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_36811.5 | 1180 | 2e-24 | 476 - 535 | 100 | 60 / 60 | plus | ABC22788 |
| MLOC | MLOC_36811.3 | 1197 | 2e-24 | 509 - 568 | 100 | 60 / 60 | plus | ABC22788 |
| MLOC | MLOC_36811.4 | 1254 | 2e-24 | 487 - 546 | 100 | 60 / 60 | plus | ABC22788 |
| MLOC | MLOC_36811.6 | 1176 | 2e-24 | 490 - 549 | 100 | 60 / 60 | plus | ABC22788 |
| MLOC | MLOC_36811.7 | 1449 | 2e-24 | 484 - 543 | 100 | 60 / 60 | plus | ABC22788 |
| MLOC | MLOC_36811.8 | 1450 | 2e-24 | 468 - 527 | 100 | 60 / 60 | plus | ABC22788 |
| MLOC | MLOC_36811.1 | 1508 | 2e-24 | 494 - 553 | 100 | 60 / 60 | plus | ABC22788 |
| MLOC | MLOC_36811.2 | 1511 | 2e-24 | 494 - 553 | 100 | 60 / 60 | plus | ABC22788 |
| JLOC1 | JLOC1_23752.9 | 1501 | 8e-25 | 412 - 471 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23752.8 | 1559 | 8e-25 | 463 - 522 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23752.7 | 1549 | 8e-25 | 467 - 526 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23752.6 | 1576 | 8e-25 | 484 - 543 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23752.5 | 1596 | 8e-25 | 490 - 549 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23752.4 | 1593 | 8e-25 | 490 - 549 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23752.3 | 1579 | 8e-25 | 476 - 535 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23752.2 | 1570 | 8e-25 | 481 - 540 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23752.1 | 1582 | 8e-25 | 490 - 549 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27317 | 549 | 3e-25 | 428 - 487 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28445 | 549 | 3e-25 | 428 - 487 | 100 | 60 / 60 | plus |
Contig Sequence (549 bp)
>U35_28445 549 Hv_44K_v2 GCGGCTTCTCAACCACGCGGCCGCCGCCGCGTTCCCGTCGGCAGAGCACAGGCGCGCGGT CCTCCGCGCACGCCTTCGATCCGCGCCGTCAGCCTCGGCGCATCCCGGACTAGATGGCTG GATATATGTCTCGCGGACCCCCAAATGGCTCTATTTATGTATGCAATCTGCCTCCTGGAA CTGATGAGACCATGTTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGAAGGACAAAA GGACTGGCCACCCAAAGATTTGGATATACAGGGACAAAGTTACAAATGAACCAAAGGGTG ATGCAACAGTCACCTATGAAGATCCCCATGCTGCTTCAGCTGCTGTGGAATGGTTCAACA ATAAGGATTTCCATGGAAGCATCATCCAGGTTCACATAGCTGAGTCAAAAAACAAAGACA CAGTTGATAACTTCACCAATGTGAGCGTCGATGCTGAGATTGTTGGACAAGATGAATTGG ATAACGGGTCAGGCAGGGGTAGAGGACGTGGTGATGGTCCAGCAAAAGCTTGGCAGCAAG ATGGAGATT
Homology of Contig U35_28445 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g12800.1 | 480 | 5e-80 | protein|zinc finger Ran-binding domain-containing protein 2, putative, expressed |
| Brachypodium v1_2 | Bradi1g19280.1 | 390 | 9e-86 | |
| Arabidopsis v10 | AT1G50300.1 | 372 | 4e-55 | | Symbols: TAF15 | TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372 |