barSeed - Barley Seed Development Database

Probe CUST_2748_PI390587928

Source Contig U35_9177

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2748_PI390587928	Hv_44K_v2	GTGATTATATTCTTTCAGATGAAAATCCGGAGGGCGAATTCGCCTGCTGCCAATGAATCC	368	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.114	1.890	1.237	0.899	0.355	0.393
Raw	146.523	215.764	116.589	144.666	18.649	21.799

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357572	3185	2e-24	2934 - 2993	100	60 / 60	plus	ABC48667
MLOC	MLOC_51130.2	2507	2e-24	2178 - 2237	100	60 / 60	plus	ABC48667
JLOC1	JLOC1_32636.1	2671	8e-25	2182 - 2241	100	60 / 60	plus
Harvest21	ABC48667	459	3e-25	119 - 178	100	60 / 60	plus	ABC48667
Harvest35	U35_9177	708	3e-25	369 - 428	100	60 / 60	plus

Contig Sequence (708 bp)

>U35_9177 708 Hv_44K_v2
GCGAATTGGGCCCTTCAGATAATGCTCGAGCGGCCGCTGGTTACGGAAGACAACGGCTCT
AGCTCGGCCAGGTTGAGAGCAACATCTTCAAGGGGTTCGTGCAATGCTGCATTCTTCGGC
AGTTGGCGGCATAGCTCGTCAGAGATAGGTCCTTCAAGGGATGATAACATGTTTAAACGC
TCAGAGACAATAAAATCATCTGGAGGGAGCAATGGCGACCATTCTTCCTCCCGCAGGAGG
CAATCTAAGGAGATCTTCCCTGAGCCATCTGGTTCTCGTGACACAGAGGATTAAGGATAC
TTCATTCTTTCTTTTTGCGATCCTTTGGGTTAACAGAGGTGGCTCTGTTGAAGCTCTGCT
GCCAGCGTGTGATTATATTCTTTCAGATGAAAATCCGGAGGGCGAATTCGCCTGCTGCCA
ATGAATCCCCAAGCAGCATACAGTCGCCGAGGCACCATTTTTTGGGGTTGGAATGTGAGG
TGAGCGTATGGAGGTTGGTGTATACCCTGCCTGGTGCACTGTCTGGACGATGGCGTCGAG
TGGCTCTGGTTTCTCTTTCTTTCCCCCTTTTTTTTTTCTCTCTCTCTCCTTGCCATGATT
AAAGAGAAAATGTCGAGCTGATTCTTTTTCTCCTTCCTGCTGTAATTGATTTGTTTCATT
GTTGATCATAGCAAAAATGCTCGTTCCATGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_9177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None