barSeed - Barley Seed Development Database

Probe CUST_27487_PI390587928

Source Contig U35_16471

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27487_PI390587928	Hv_44K_v2	GTAACCTCAGACCGAGTTAATTTGAGCCTCTGGCTTTTGGATGTTTCACTTTTGAAAAAA	1347	GeneList: darkslateblue MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.977	2.593	1.405	0.771	0.215	0.196
Raw	6874.490	13964.957	6476.633	5711.710	552.872	552.374

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8078.1	2030	5e-22	1654 - 1708	100	55 / 55	plus
Harvest21	ABC48425	131	2e-22	23 - 77	100	55 / 55	minus	ABC48425
Harvest21	ABC07055	1397	2e-22	1324 - 1378	100	55 / 55	plus	ABC07055
Harvest35	U35_16471	1420	3e-25	1348 - 1407	100	60 / 60	plus

Contig Sequence (1420 bp)

>U35_16471 1420 Hv_44K_v2
TCGAGCACTGTTGTCCCCACCGCACTCCACACACCCCCGCCGGCCTCACCGCGCACCAGG
CTGCCGCTCTCCACCGTGCCAATGGCGCCCGCCCGAGCAGCCCTCCTCGCCCTCCTCGTG
GCCGCGCTGCTCCCGCCTGCTCTGTCCCGTGGGCAGGGGCGTGGCCCGCACCTGCCCGGG
CACGGCCTGGTCCATCGGCACGGGCCTGGCATCGGTCACCACGCCCACGCGCCGCTCGGC
GGTGGCGCCTGGGCGTCCGCTCACGCCACCTTCTACGGCGGCGGTGACGCTTCCGGCACC
ATGGGCGGGGCGTGCGGCTACGGGAACCTCTACAGCACGGGGTACGGCTCCAACACGGCG
GCCCTGAGCACGGCGCTCTTCAACAACGGCCTCAGCTGCGGGGCCTGCTTCGAGGTGCGG
TGCGACCCGGGCGGCACCGAGGCCGGCGCGCCCCACGCCTGCCTCCCCGGCTCCACCGTG
GTGACTGCCACCAACTTCTGCCCGCCCAACTTCGGCGAGTCGTCCGACGCCGGCGGCTGG
TGCAACCCTCCCCGCGCCCACTTCGACATGTCCCAGCCCGTCTTCCAGCGCATCGCGCTC
TACCGCGCCGGCATTGTCCCCGTCTCCTACCGCAGGGTGGCGTGCCAGAAGAAGGGCGGC
ATCAGGTTCACGATCAATGGCCACTCGTACTTCAACCTGGTGCTGGTCACCAACGTGGGT
GGCCCCGGCGACGTGCACGCGGTGTCCGTCAAGTCGACGCGCTCGGCGGCGTGGCAGGCG
CTCTCACGCAACTGGGGGCAGAACTGGCAGAGCAACGCGCTGCTCGACGGGCAGGGCCTC
TCGTTCCGCGTGACGGCAGGCAACGGCCAGTCCGTGGTCTCCAACAACGCCGTCCCGCGC
GGCTGGTCATTCGGCCAGACCTTCAGCGGCGCCCAGTTCCACTGAGCGCCTGCATCATCC
GCAGACGCAGTACCATCTGGTTGTAGTAGTGGTTTTAGCGAGTGGTGGTCGTCGTCAACC
TCCCGATTGGAGCGTGCTGGGAAGCGCCATGGTTTTATGGTTGGTCCTTCCTCAGGCATA
CGTTCGTGGGGATTCGAGTTAGTAGCAGGTAGTTAGGCCTGGTATTATCATGGGCTTTTA
ATTGTCCTGGTGTGGTGTGTGTGCTAGCTGAACATTTGAACGAGGTTTTGGCTAGGATGG
CAGCGGTGGTAAAGGCTGGTTTGATTAACCGATGCCGCCTTGTATCACCCGCCGATTAGC
GAATGGGCCTCTTGGGTAGTGGCCTTTGTCTCGAGGATGTTTTGGTGTGTTCCTTGTTTG
TGTGTGTGGTGTGTGCTTGGCTGTGATGTAACCTCAGACCGAGTTAATTTGAGCCTCTGG
CTTTTGGATGTTTCACTTTTGAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16471 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51040.1	292	6e-134	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi3g59460.1	293	3e-141
Arabidopsis v10	AT2G03090.1	253	2e-109	\| Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1.3, EXPA15 \| expansin A15 \| chr2:917361-918554 REVERSE LENGTH=253