barSeed - Barley Seed Development Database

Probe CUST_27486_PI390587928

Source Contig U35_30764

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27486_PI390587928	Hv_44K_v2	AGCCGATCAACATCGTCTTCACCGGCAAGAAGAAGAAGAAGAAGGGCGGTGCGGGCGGGG	281	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.007	1.872	1.068	0.576	0.229	0.233
Raw	2562.760	3545.253	1816.963	1515.717	213.840	241.885

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (367 bp)

>U35_30764 367 Hv_44K_v2
CGCACTCCAGCCCCGACCCCCAGTCTAGACTCCCCCGCGCCGCGCCGCGCCGATGGGGCG
CAAGAAGAACGTCGCCATCGACGACGACGAGTACTCCCTGCCGCAGGACGACGAGCCCGC
GCCGCCACCCGCCGCCGTGGAGAAGGAGAAGGAGAAGCCGCCGCCCAAGAAGGGCGGCAA
GAAGGGGAAGAAGGGCGGCAAGTCCGCCGCGCACGACGACGACGACGACTACGAGCCCGC
CGCCCCGCCGCCGCCGCCGCCCGGGGATGACGAGGGGGACGAGCCGATCAACATCGTCTT
CACCGGCAAGAAGAAGAAGAAGAAGGGCGGTGCGGGCGGGGGCGGGATGAGCGCCTTCGA
CGCCCTC

Homology of Contig U35_30764 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None