barSeed - Barley Seed Development Database

Probe CUST_27473_PI390587928

Source Contig U35_16479

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27473_PI390587928	Hv_44K_v2	GTTTTCAACTCAGGCAAAAATTATACAGCGATCGGGCAACATATATTTGCGGTATAAAAA	1285	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	2.951	2.932	2.342	3.064	2.726	2.724

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73300.1	1412	3e-21	18 - 74	98	57 / 58	minus	ABC06968 ABC15595
JLOC1	JLOC1_48791.1	1905	2e-21	26 - 82	98	57 / 58	minus
JLOC1	JLOC1_48790.1	1447	2e-21	1365 - 1421	98	57 / 58	plus
Harvest21	ABC06968	1350	3e-25	1279 - 1338	100	60 / 60	plus	ABC06968
Harvest35	U35_16479	1357	3e-25	1286 - 1345	100	60 / 60	plus

Contig Sequence (1357 bp)

>U35_16479 1357 Hv_44K_v2
ACAGACCGGCAGATCTTGCCTTCTTTGGCGACGCCCCCCTTTACCTCTTTCTGTAGCTCC
TTTGATCTTTATGCCCTCCTCCCCTCACTTTATCAAGAAATCTCAGGACAAATCTTGAGG
CGCTTTTAGAGCGAGAGGGAGACCGATGGCGGCGGCGGCGGCGAGCGTCGGAGGCGGGGC
GGCGCCGTTCGTGTGGAAGACGTACCGGATGGTGGAGGACCCGGGGACGGACGGCGTCAT
CGGGTGGGGGAAGGGGAACAACAGCTTCGTCGTCGCCGACCCCTTCGTCTTCTCGCAGAC
CATGCTGCCCGCCCACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAGCTCAACAC
CTATGGCTTCCGCAAGGTGGATCCGGACCGGTGGGAGTTCGCCCACGGCTCGTTCCTCCG
GGGCCAGACGCACCTCCTGCGCAACATCGTCCGCCGTGGTACCGCCGTCGCCGGCGGCGG
CGGCAAGCGCAAGGACGCGTCGGCGGCCGACCTGACCGGCGACGACATGACCATGGTCGC
CACGGAGGTGGTGAGGCTGAAGAAGGAGCAGAGCACCATCGACGACAGGGTGGCCGCCAT
GTGGCGCCGCGTGCAGGAGACGGAGCGGAAGCCCAAGCAGATGCTGGCGTTCCTCCTCAC
CATCGTCGGCGACCGCGACACGCTGCAGCGCCTGGTCGCCAACAGTGGCAACGCGGCCAG
CGGCGACCAGGAGCCGGTGGAGGGCGGCGAGAAGAGGGCGAGGCTGCTGCTTGACGGCGA
CTTCGGCAACGTGTCCGCGTTTGGGCCGGACGCCGTCGACTTCGCGGGGTTCTACGCCGA
CGGCGACGCATTCGCCAATGTGCCGGTGCCGGTGGAGGCGGCCGCCGGGTCGGGCGGCGG
TGGTGCCGGCTGCTCGTTTGCCTTTGGAGTGGACAGTGGGTACTGATGAGCCCTGACGTC
CGGCTGAAATGTCCTGCCCGCGTGTGCTAACTGCTTGGTTTATGGCCGAATTATTGGCAT
TGCGTGACTGCCATTTTGACCGCTAAAAAAAAAAAAAAAAATGTTCCGGGGACGACACGC
TTTGCAAATTCGTGTTTTATCTGGACGTTTATCCACGCAATGGGTTTTATCTGTCCGTTT
TGAGGGCGCCTCCTCCGCTGGGCAGCTACGGTCAACAATAGTGGCGTCAATTCGTGTGCT
TTACAAGTCAACAAAAAGTAGCCAAGTCAGATTTTAAGGATTTTGCCAAAATACCTCTGT
AATAAATACAGACCTACGTACCATCGTTTTCAACTCAGGCAAAAATTATACAGCGATCGG
GCAACATATATTTGCGGTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_16479 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35960.1	279	2e-99	protein\|HSF-type DNA-binding domain containing protein, expressed
Brachypodium v1_2	Bradi1g38140.1	253	2e-108
Arabidopsis v10	AT3G24520.1	330	5e-51	\| Symbols: AT-HSFC1, HSFC1 \| heat shock transcription factor C1 \| chr3:8941455-8942531 FORWARD LENGTH=330