barSeed - Barley Seed Development Database

Probe CUST_2746_PI390587928

Source Contig U35_9179

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2746_PI390587928	Hv_44K_v2	ATCGTTCTCGCTGGAAATTTCTTCAGAACGCCGCTAAAATCTCCCAGTATGGTCTTCCAT	346	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.183	2.785	2.911	1.134	0.345	0.274
Raw	65.472	255.838	217.008	140.316	13.592	11.791

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376625	2492	2e-24	2155 - 2214	100	60 / 60	plus	None
MLOC	MLOC_48116.1	1753	2e-24	937 - 996	100	60 / 60	plus	None
JLOC1	JLOC1_30935.1	1616	8e-25	935 - 994	100	60 / 60	plus
Harvest21	ABC19556	637	3e-25	233 - 292	100	60 / 60	minus
Harvest35	U35_9179	638	3e-25	347 - 406	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_9179 638 Hv_44K_v2
TCCAGAGTGCTACCCAAAGTAGCAGGTACACGGATAAGTGCGACATCTATGCCTTCGGCA
TGATCCTCGGCGTTCTGCTCACGGGGANAGACCCCGCAGACCCATTTTTCACCGGAGAAA
GTGGACGGGGCAGCCTGGCTCGATGGCTCCGTCATATGCAGCATTCCGGGGACACGAAAG
AAGCACTGGACAGCAGCATCGTAGGGGAGGAGGTCGACGAGGAGGAAATGGTGATGGCCG
TCAGGGTCGCCATCGTGTGCCTCTCGGAGCTGCCAGCCGATCGGCCATCCAGCGACGAAC
TCGTCGCGATGCTCGCCCAGCTCCACAGCTTCTAGCCACCTCCATCATCGTTCTCGCTGG
AAATTTCTTCAGAACGCCGCTAAAATCTCCCAGTATGGTCTTCCATCTCGCTGAGACGAC
GCCGAATGGAGTTGGATCGAACGCCTGCCGGCTATACAACCCGGCCGGCCATTCAGCTTC
TTCAGGCTGAATCCAGATTGTCCAGATTGGAGGCAGCAGCAATGTAGAAGGCCAGGCCAG
ACAAGTGTGGCAAAATAGTTGCCCGTCAGTTTCATGGCACATGCCGGTGGTTGAGCTTCA
TGTAAGAAGCATGATGGGTGATGTTCTGGCCATGAATG

Homology of Contig U35_9179 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None