- Probe CUST_27468_PI390587928
- Source Contig U35_42745
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27468_PI390587928 | Hv_44K_v2 | ACATAGGTGTGAGAATAAGCTTCTTTCTTTGGGTTGCTCTGCTTAATCTCACTACAATAT | 645 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.149 | 1.208 | 1.129 | 0.871 | 0.288 | 0.371 |
| Raw | 45.325 | 72.704 | 60.809 | 69.614 | 8.621 | 12.073 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356818 | 1882 | 3e-21 | 502 - 561 | 97 | 58 / 60 | plus | ABC18647 |
| MLOC | MLOC_41502.1 | 613 | 3e-21 | 523 - 582 | 97 | 58 / 60 | plus | None |
| MLOC | MLOC_41502.2 | 471 | 3e-21 | 381 - 440 | 97 | 58 / 60 | plus | None |
| MLOC | MLOC_41502.3 | 466 | 3e-21 | 376 - 435 | 97 | 58 / 60 | plus | None |
| JLOC1 | JLOC1_27030.2 | 453 | 2e-21 | 363 - 422 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_27030.1 | 471 | 2e-21 | 381 - 440 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC38611 | 708 | 3e-25 | 646 - 705 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27520 | 708 | 6e-22 | 622 - 681 | 97 | 59 / 61 | plus | |
| Harvest35 | U35_42745 | 708 | 3e-25 | 646 - 705 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28563 | 708 | 6e-22 | 622 - 681 | 97 | 59 / 61 | plus |
Contig Sequence (708 bp)
>U35_42745 708 Hv_44K_v2 GCGAGACCTGCAATAAACAAACACCAGGCGGGCGGCAAGCGATCTTGGGAACCAGCGGAG CGTGCGAAGGCGGCCAAGCGGACGACCGAGATGGAGGTGTGGCCGTCATCACCATTTGCA ACCCGCCAGTCAACTCCCTCTCCATCGATGTACTGCTAAGCTTAAAGGAAAGCTATGAAG AAGCTCTTGAGAGGAAGGATGTCAAAGCTATTGTTGTTACAGGGAAAGGAGGAAAAAATT CTGGAGGATTTGATATTAGTTCCTTTGGGGGTCTTCACAGTGGAAAAGTTGAGCAGCCAA AGGTTGGTTACATATCAATAGACATTCTCACTGAACTTCTATAAGGAGCAACAAAGCCAT CAGCGGCTGCAATTGATGGTCTTTGTCTTGGCGGAGGATTAGAAGTTTCCATGGCATGCC ATGCAGGTATTTCAACTCCCACTGTCAATTAGGACTTCCAGAACTTCAACTTGGTATCAT TCCAGGATTTGGAGGCTTTGGTTTTGATACACAGATTCTTCAGCATATCCCTTCTTGTAT TTTTCATGCTTTGGTTTGCCTCGAAGCCGGGCTCCCCAGCTACCACCCAGTCAAGTGAAG ATAGTTTAAATAAACCTGCTGGGTGGNGAAACCACAGCTGGTTCTACATAGGTGTGAGAA TAAGCTTCTTTCTTTGGGTTGCTCTGCTTAATCTCACTACAATATCAT
Homology of Contig U35_42745 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g24680.2 | 659 | 7e-56 | protein|3-hydroxyacyl-CoA dehydrogenase, putative, expressed |
| Brachypodium v1_2 | Bradi4g28310.1 | 724 | 2e-60 | |
| Arabidopsis v10 | None |