barSeed - Barley Seed Development Database

Probe CUST_27456_PI390587928

Source Contig U35_30772

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27456_PI390587928	Hv_44K_v2	CTCATTTGCTTTACACTGGCTCTGTATTGGAATGTGACAATTAACTACCTGATTCTCACT	337	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373511	2704	7e-23	359 - 418	98	59 / 60	plus	ABC10964
MLOC	AK355659	1991	7e-23	348 - 407	98	59 / 60	plus	ABC10964
MLOC	MLOC_12763.4	597	7e-23	165 - 224	98	59 / 60	plus	ABC10964
MLOC	MLOC_12763.3	1048	7e-23	452 - 511	98	59 / 60	plus	ABC10964
MLOC	MLOC_12763.1	2616	7e-23	391 - 450	98	59 / 60	plus	ABC10964
MLOC	MLOC_12763.2	2662	7e-23	391 - 450	98	59 / 60	plus	ABC10964
JLOC1	JLOC1_8576.2	1116	4e-23	369 - 428	98	59 / 60	plus
JLOC1	JLOC1_8576.1	1162	4e-23	369 - 428	98	59 / 60	plus
Harvest21	ABC10965	386	1e-23	108 - 167	98	59 / 60	plus
Harvest35	U35_30772	397	3e-25	338 - 397	100	60 / 60	plus

Contig Sequence (397 bp)

>U35_30772 397 Hv_44K_v2
CGCCCCCTCACCCCCCCCCCCACCCACCCAGTCGTGCCGGCGCGGCGACGCTGCTGCTCT
GGCCGTGTCGGCAGTTCGAGATCGGCGCGCGGGGCCGCCGTGAGCTGGCCGCCCTGGCCG
CCCTGGCCGCCGGTTTCGCCTTCTTCCGGGCCGCCAACGCGGCCGTCCGCGTCGCCGTCT
CCCGCGATCCGCTCTTCGTCAACACCGCCGTCTCGCTACTCCACTCCTCCCTCACTTCCG
CCTCAGGTGGCTACTTTGCTTATGACCAATTGGATATGCTCCGCTATCGGCTATACAGTG
GATGGATTCGTGGAATTCTCATGCACACCTTATTCTGCTCATTTGCTTTACACTGGCTCT
GTATTGGAATGTGACAATTAACTACCTGATTCTCACT

Homology of Contig U35_30772 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None