barSeed - Barley Seed Development Database

Probe CUST_27453_PI390587928

Source Contig U35_16481

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27453_PI390587928	Hv_44K_v2	TCTGTACTCCGGTGGAGTACAAGTTCTTATGTGCGTGTGTGTACACTGTGTATGCAGTAT	456	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.101	0.761	0.840	1.477	1.301	2.121
Raw	16.286	201.612	178.131	480.990	151.929	271.825

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73300.2	1333	7e-23	337 - 397	98	60 / 61	minus	ABC06968
JLOC1	JLOC1_48791.1	1905	4e-23	1394 - 1454	98	60 / 61	minus
Harvest21	ABC41511	597	1e-23	434 - 494	98	60 / 61	plus
Harvest21	ABC41042	496	6e-22	439 - 496	98	57 / 58	plus
Harvest35	U35_16481	520	3e-25	457 - 516	100	60 / 60	plus
Harvest35	U35_44068	597	1e-23	434 - 494	98	60 / 61	plus

Contig Sequence (520 bp)

>U35_16481 520 Hv_44K_v2
ACAGACCGGCAGATCTTGCCTTCTTTGGCGACGCCCCCCTTACCTCTTTCTGTAGCTCCT
TTGATCTTTATGCCCTCCTCCCCTCACTTTATCAAGAAATCTCAGGAGAAATCTTGAGGC
GCTTTTAGAGCGAGAGGGAGACCGATGGCGGCGGCGGCGGCGAGCGTCGGAGGCGGGGCG
GCGCCGTTCGTGTGGAAGACGTACCGGATGGTGGAGGACCCGGGGACGGACGGCGTCATC
GGGTGGGGGAAGGGGAACAACAGCTTCGTCGTCGCCGACCCCTTCGTCTTCTCGCAGACC
ATGCTGCCCGCCCACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAGCTCAACACC
TATGTCAGTCCGTTGATTCATATTACTAATCCTCCATTTGTCTTGTCCATTTCCTGTACT
TATCTTGATTCANAGAGGGAGAGAGAGAGAGAGATTTCTGTACTCCGGTGGAGTACAAGT
TCTTATGTGCGTGTGTGTACACTGTGTATGCAGTATGCGT

Homology of Contig U35_16481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None