barSeed - Barley Seed Development Database

Probe CUST_27445_PI390587928

Source Contig U35_16485

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27445_PI390587928	Hv_44K_v2	CTCTGTCTCGGCAATAAATAATTGATCCAAGGCCTTCATGAATAAAATGCAATTGAAAGA	1832	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.377	3.921	1.196	0.980	0.334	0.415
Raw	164.918	831.568	200.975	274.205	30.170	42.867

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373483	1954	2e-24	1834 - 1893	100	60 / 60	plus	ABC08646
JLOC1	JLOC1_50004.1	1505	8e-25	1371 - 1430	100	60 / 60	plus
Harvest35	U35_16485	1908	3e-25	1833 - 1892	100	60 / 60	plus

Contig Sequence (1908 bp)

>U35_16485 1908 Hv_44K_v2
GTGCCTTGAGCTAATCGTCTGTGTTCACTTGCTACACTCACATCACGTAGCTAAGTTAAG
CTAGGAAGAAGCACTCGCCCCTCGGCGAACATGGCGGTAGCCGGATCAGCTGCTGCTGGT
CGTCCCAAACTGGGGGAGGAGAAGCTGATCATCCGGCCGGAGAAGGTGCGGTTCATCGAC
ATCCTGTCCCTGCTGATCCTGCGCCGGCCCATCACCAGCTACGCCTTCGTCGACGCCGGC
GACCAGACGGCCCGTGACGTCGGCATCACGCCGGGCGACATCTTCGTCGCGCTCACCCAG
ATCATCCAGAAGGCCCTCGCTGCTGCCTACTACCCGGCGAAGATAATCGGGGCCATCGTC
GAGCTGCTCCTCAACTTCTTCGCCCTCAACGGAGGCCTGCTCGGCATCGTATGGAACGTC
ATCAGATTTAAGCTGGTGATCCCTCGCCGGGAGGCGGCCAACTTCCGGACGATGATCGGG
ATGATCGACGGGAGGACGGAGCTGAAGCCTGCACCAGCAGCATCTGTCGGCGACATGCGG
CAGCTGCAGGTGCTTGACGTCGTGGTCTCCGGCGAGGTGGCGGACCTGGAGAGCGGCGGG
TACGTGACGGCTGGGACGCCCCTCGTCCTGCGGCAGTACCTCATCCTCGAGATCACAGTC
ATGGCGGCCAAGATCGCCTACGAGAACGGCGCCTTCGTCAAGAACGTGGTCAACAACGTG
TGGAAGTTCAATTTCGTTGGGTTCTACAACGGCTGGAACAAGTTTCTGAAGGAGGACACG
ACCCAGGCGTTCGTTTTCACGGACCGGGCCAAGGATGCGAGCGTGGTGGTGGTGGCGTTC
CGCGGCACGGAGCCATTCAACATGCAGGACTGGTCTACCGACGTGAACCTGTCATGGCTG
GGCATGGGCGCCATGGGCCACGTCCACGCCGGCTTCCTCAAGGCGCTGGGTCTCCAGGAG
GAGGACGGCAAGGACACCAACCGCGCCTTCCCCAAGGACGCCCCCAACGGCGCCGCCCCC
ATCGGCAAGGACATCGCCTACTACAAGCTCCGCGAGGTGATCCGCGACCAGCTCAAGGCG
CACTCGCAGGCGCGGCTCGTCATCACGGGCCACAGCCTGGGCGGCGCGCTCGCCGCCGTC
TTCCCCGCGCTGCTGGCGCTGCACGGGGAGACGGAGATCCTGGGCAGGCTCGGCGCCGTG
CAGACCTACGGGCAGCCGCGGGTGGGCGACGGCGCCTTCGTCAACTTCTTCCGCGCCGAG
GTGGAGAAGGCGGCGGCGTTCTACCGCGTGGTGTACCGGTACGACATCGTGCCGCGGGTG
CCGTTCGACGCGCCGCCCGTGGCGGAGTTCAGACACGGCGGCTCGTGCGTGTACTATGAC
GGGTGGTACGACGGGAAGGTGCTCGCCGGCGACGCGCCCAACCCCAACTACTTCGACCCG
CGGTACCTGCTGTCCATGTACGGCAACGCGCTTGGGGACCTGGTGAAGGGAGCCTTCCTG
TGGGCGAGGGCCGGCAAGGACTACCGCGAGGGCGCCGTCTCCCTGCTCTATCGCGCCTCC
GGCCTGCTCGTCCCCGGCCTCGCCTCCCACAGCCCGCGCGACTACGTCAACGCCGTCCGC
CTCGGCCGCATCGCCCCAAAGTCACTCTAAGTCTAAGGCCGGACTGCCGGAGACAAGAAG
AGACGTGCCAATGCCACTGTGTGTTTACGAGAGAATTGGCGAGTGAGATGAATAAATTGT
TCCATTCCGTTAGGTTGTGTGTGCGCGCTATATTATGAAGTGTTGTACTGCTTAGGTGTT
CATTCATGTGTGACTCCCCTATCTGCATGCCGCTCTGTCTCGGCAATAAATAATTGATCC
AAGGCCTTCATGAATAAAATGCAATTGAAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_16485 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g06140.1	546	0.0	protein\|lipase, putative, expressed
Brachypodium v1_2	Bradi2g35440.1	524	0.0
Arabidopsis v10	AT3G14360.1	518	3e-73	alpha/beta-Hydrolases superfamily protein \| chr3:4791596-4793534 FORWARD LENGTH=518