barSeed - Barley Seed Development Database

Probe CUST_27440_PI390587928

Source Contig U35_16488

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27440_PI390587928	Hv_44K_v2	GCGTCCAGTTCGTTTGTTCTTTGTGTTATCAGTTGTGTACTTATGTCTAATGAAAAACTT	2106	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.141	0.213	0.709	1.805	1.633	1.628
Raw	3077.397	7271.180	21463.200	83695.667	27051.767	29370.200

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363664	2937	2e-23	1411 - 1468	100	58 / 58	minus	ABC05191 ABC17058 ABC44740 ABC52886 ABC52899
MLOC	AK249361.1	1416	2e-23	1332 - 1389	100	58 / 58	plus	ABC05191 ABC52886 ABC52899
MLOC	MLOC_39835.1	3583	2e-23	2518 - 2575	100	58 / 58	plus	ABC05191 ABC17058 ABC44740 ABC52886 ABC52899
MLOC	MLOC_39834.1	2270	2e-23	1060 - 1117	100	58 / 58	plus	ABC05191 ABC17058 ABC44740 ABC52886 ABC52899
JLOC1	JLOC1_26008.1	2636	1e-23	1009 - 1066	100	58 / 58	minus
JLOC1	JLOC1_26007.2	2680	1e-23	1514 - 1571	100	58 / 58	plus
JLOC1	JLOC1_26007.1	2316	1e-23	1150 - 1207	100	58 / 58	plus
Harvest21	ABC05191	1456	3e-25	1353 - 1412	100	60 / 60	plus	ABC05191
Harvest35	U35_16488	2210	3e-25	2107 - 2166	100	60 / 60	plus

Contig Sequence (2210 bp)

>U35_16488 2210 Hv_44K_v2
CTCGCCGAGAGGAGAGACGCCTTCCCAAGGGAATTCCTGCCGGCCCCCAAGGTTCTGGAT
TTCCTCCTCGGCGAGAAATCCTTGCAGTTCTCCAGGTTTGCAACTAGTGTTCTTTTGCTA
TTTAAGGACTCGGCAATTGTGTGTGTGTGAGAGAGAGAGAGACTGGGAACTTTCAGCCTG
CAGAGGGTGGTGTTGTTGGGATGGGTAATCAGAATGGGACCCCCGGGAACGACTACTACG
GCCGGTTCCCCAGGGAGCATCCTGCTTCCAGGTATGCCGATGGGATTGAAGAGGATAGCT
ACTCGGACTTGAAGAAGTCTGACAAGCCCTGGCCCGATGCTGACTCGTTCAAGCCCACCG
CCGCTGGTATTCTCAGGCAAGGGTTGGATCCGACATCCATCTCTGTACTCGGGCGCAAGA
CGGCGGACCTCAGGGAGCACTATATCCTTGGCCGGAAGCTTGGCCAGGGCCAGTTTGGGA
CGACGTACCTCTGCACCGAGATAAGTACAGGGTGCGACTTTGCTTGCAAGACCATCCTCA
AGCGCAAGCTCATCACCAGAGTGGATGTCGAGGATGTGCGCCGTGAGATCCAGATAATGC
ACCATTTGTCGGGGCACAAGAACGTTGTCTCCATCAAGGATGTCTATGAAGACGTGCAGG
CGGTCCACATTGTGATGGAGCTCTTGCCTGGCGGGGAGCTCTTTGACCGGATTCAGGGGA
ACGGGCGTTACAGTGAGATGAAGGCTGCAGAGATTACAAGAATTGTTGTTAGCATTGTGG
CCATGTGCCATTCACTTGGTGTGATGCACCGCGATCTCAAGCCGGAAAATTTCCTCCTCC
TTGACAAAGATGATGACCTGTCCATAAAAGCGATTGATTTTGGCCTATCCGTCTACTTCA
AGCCAGGTCAGGTTTTCAGTGAGCTAGTAGGCAGCCCGTTCTATGTTGCCCCTGAGGTAT
TGCACAAACGCTATGGGCCAGAGTCCGATGTGTGGTCAGCTGGAGTGATACTCTATGTAT
TGCTAAGTGGGGTTCCACCATTTTGGGCAGATACACAGAAAGGCATATTTGACGCAGTTT
TGAAGGGGCACCTTGATTTGGAATCAGACCCCTGGCCTAAGATATCTGACAGTGCAAAGG
ACCTTATAAGAAAGATGCTTTGCAATTGCCCTTCAGAGCGTTTGAAAGCCCATGAAGTGC
TACGGCATCCCTGGATCTGCGAAAATGGGCCGGCCACTGACGGAGTTTTGGATCCTAGTG
TCATCTCTCGGCTCAAACGGTTCTCTGCAATGAACAATCTACAGAAATTGGCTCTGAGAG
TGATAGCTGAGCGTCTTTCAGAAGAGGAGATTGCTGGATTAAGAGAATTATTCAAGACAG
TGGACATAAAAAATAGTGGTGTGATCACTTTTGGTGAGCTAAGAAAAGGTTTAACAAGAT
ATGGCAACGGATTGGTGGATACCGAGATTTGTGATATAATGGAAGCGGCTGATACAGACA
CCGATGTAACCATAAATTACGAAGAATTTATTGCTGCAACCATGCCTTTAAACAAGATAG
AGCGGGAAGAGCACCTGAAGGCAGCTTTTACATATTTTGACAAAGATGGCAGTGGCTATA
TCACAGTCGACAAGCTTCAACTAGCCTGTGCAGAATATAACATGGAGGGCACTCTCCTTG
AAGAGATTATTTCAGAAGCCGATCAGAACAATGACGGCCAAATTGATTATGCCGAATTTG
TAGCCATGATGCAAGGCAACGCCAACGGTGGCAATATTGGACTTGGGCGTCCAACTATGG
AGACCAGTCTGAATGTGACCTTGAGAGATGCAGCTCAAGTACATTAATGCACAGATTTTG
TTCTCTTCTCTATGCCATTATGTTCACAGCCCAAATTGGGCCGTGGGCATGTACTTCCGA
AGTGCGGGAAGAGAACAAGTCATTCTTTCTGTGGCATTTATCGAAAAAATAAGCTGGGCT
AGCTAGCAGTACAGTCATTGTGAGAGACAGCGTCGTGGGTTACATATATATAGTAAGTAG
TTGTGTCCTGGTTCATATGGCTGCAAGACTGGCTGTTATCCAGCAGGTGGAAGTAAGAGG
GGGCGTGCGTCCAGTTCGTTTGTTCTTTGTGTTATCAGTTGTGTACTTATGTCTAATGAA
AAACTTATCTTAATGAGATGCCATATTCCCCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16488 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g03660.3	543	protein\|CAMK_CAMK_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g76560.2	550
Arabidopsis v10	AT2G17290.1	544	\| Symbols: CPK6, ATCDPK3, ATCPK6 \| Calcium-dependent protein kinase family protein \| chr2:7517005-7519239 FORWARD LENGTH=544