barSeed - Barley Seed Development Database

Probe CUST_27437_PI390587928

Source Contig U35_42752

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27437_PI390587928	Hv_44K_v2	ATTCGGGTTTGTTGGAGAAATTTATTCGGGTTTGTTATATTTTTCGTTTCACGTGTACCA	641	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250570.1	974	7e-23	713 - 773	98	60 / 61	plus	ABC05767
MLOC	MLOC_51124.1	2033	7e-23	1666 - 1726	98	60 / 61	plus	ABC05767
JLOC1	JLOC1_32630.1	948	4e-23	568 - 628	98	60 / 61	plus
Harvest21	ABC05767	1121	1e-23	723 - 783	98	60 / 61	plus	ABC05767
Harvest35	U35_42752	719	3e-25	642 - 701	100	60 / 60	plus
Harvest35	U35_16626	1121	1e-23	723 - 783	98	60 / 61	plus

Contig Sequence (719 bp)

>U35_42752 719 Hv_44K_v2
GGCTCCAAAAACCAGACCAAACCAGAACCGGTTGATCCGTCAGTAGCCGCGGCCGCCGGC
GATGGAGAAGGGCAAGGGTCTCGCCCGACGCTGGGCAGTGGAGCTCCACGACGTATCTTC
CTCCTCCTCCTCGCCTGCCTTCCCCGATCCTCCTGGCTTCACCAGATCCGCCCCGGAAGC
GAAAGCCTGGGAGGTGGCGCAGGCGCCCTTCAAGAACCTGATGATGATGGGTTTTATGAT
GTGGATGGCCGGGAGCACAGTCCACCTGTTTAGCATTGGTATCGTCTTCTCTGCTCTCTG
GCAGCCCTTCAACGCACTCCGATCTGTCGGGAAAGTTTTCGAACCATTTAAGGACCCAAG
GGTGGATACACTTGCACCTAAGTTACTCTTCACTGCTCTCAACTTGGCCGCTATGGGTTT
GGGTGTTTGGAAGCTCAACACATTGGGTCTTCTTCCGACAAATGCATCAGACTGGGTATC
TTCACTGTCTCCTGCTCGGGAGGTTGAATATGCTGGTGGAGGGATCCCCTTGATGTAATG
CCCCTTGTGATCTTCAATTGGTCAAACTCTTTGGCTTTACTACTTGGAGGATGGTATCTG
TACTAAAGTGAAATTTATACCCTGGTGAAGGGAGAAATTTTATTCGGGTTTGTTGGAGAA
ATTTATTCGGGTTTGTTATATTTTTCGTTTCACGTGTACCAAATTCGGATTGATATCTA

Homology of Contig U35_42752 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g24580.1	179	4e-82	protein\|transmembrane protein 85, putative, expressed
Brachypodium v1_2	Bradi1g61820.2	176	2e-86
Arabidopsis v10	AT5G10780.2	187	2e-54	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 395 Blast hits to 395 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 122; Plants - 51; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). \| chr5:3408422-3409784 FORWARD LENGTH=187