barSeed - Barley Seed Development Database

Probe CUST_27435_PI390587928

Source Contig U35_28460

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27435_PI390587928	Hv_44K_v2	TGACGTTCAAGTACAGCTCGAACCACAACGTCCTTGAAGTGACCGGCGACGACTACGAGG	167	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.326	0.379	1.070	1.805	1.099	1.695
Raw	2.888	7.521	22.724	62.893	13.100	21.864

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66145.1	929	2e-24	279 - 338	100	60 / 60	plus	None
JLOC1	JLOC1_43573.1	1083	8e-25	296 - 355	100	60 / 60	plus
Harvest21	ABC27337	610	3e-25	168 - 227	100	60 / 60	plus
Harvest35	U35_28460	610	3e-25	168 - 227	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_28460 610 Hv_44K_v2
GAAGATGGCGGCGACGAAGACGGCGGTTTGCATCGCCGCGCTGGTATCGCTGGTGCACGT
GGTCGCCGCTGCCGACTACATCGTCGGCGACCCAACCGGCGGCTGGCAGGGAAAGACGGA
CTACAAGTCCTGGGCTTCGGCCCGCACCTTTGTTCCCGGAGACACCCTGACGTTCAAGTA
CAGCTCGAACCACAACGTCCTTGAAGTGACCGGCGACGACTACGAGGCGTGCTCCACGGC
CAACCCTGTGATCATCGACAACAGCGGCACCACCACCATCGCGCTCACGGCGCCGGGGAA
GCGCTACTTCATCTGCGGCGGGCCGGGCCACTGCCAGAACGGAATGAAGCTGGAGGTGGA
CGTCGCCGACCGCCCTGCACCCACGGCACCCAGCTCGCCGCCGCAGCTGCCACCGGCACC
TACGCCACCGTCACCAGTTCCGGGGACATGGCCACCGGCTCCGGCACCCGCGGCTGAACC
GCCAAGACATGCAGGGCACAAGAGGCACAAGAAGAGGCACGCCCCACCTACAGCTGCGCC
CACGGTGGAGCCCGCGGAAGCGTACTTNCCGCTCGCGACGCTGGCGCCCATGTCCTCTCC
AGCTGCATCT

Homology of Contig U35_28460 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g52050.1	251	9e-57
Arabidopsis v10	None