- Probe CUST_27434_PI390587928
- Source Contig U35_6753
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27434_PI390587928 | Hv_44K_v2 | GCATGGGGTTCTGGCTTGCTTCAATGGCTTGAATTCACCAAACTAAGTGCATTATCAATT | 709 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 7.086 | 3.806 | 0.775 | 0.615 | 1.070 | 0.953 |
| Raw | 43.403 | 27.813 | 6.795 | 7.205 | 3.056 | 3.038 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4738.7 | 1705 | 7e-23 | 147 - 206 | 98 | 59 / 60 | plus | ABC48447 |
| MLOC | MLOC_4738.6 | 2395 | 7e-23 | 779 - 838 | 98 | 59 / 60 | plus | ABC48447 |
| MLOC | MLOC_4738.2 | 3063 | 7e-23 | 1902 - 1961 | 98 | 59 / 60 | plus | ABC48447 |
| MLOC | MLOC_4738.1 | 1142 | 7e-23 | 568 - 627 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_4738.5 | 1521 | 7e-23 | 790 - 849 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_4738.3 | 3159 | 7e-23 | 2001 - 2060 | 98 | 59 / 60 | plus | ABC48447 |
| MLOC | MLOC_4738.4 | 1454 | 7e-23 | 664 - 723 | 98 | 59 / 60 | plus | ABC48447 |
| JLOC1 | JLOC1_2987.3 | 2956 | 4e-23 | 866 - 925 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_2987.2 | 2959 | 4e-23 | 866 - 925 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_2987.1 | 3320 | 4e-23 | 866 - 925 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC14232 | 769 | 3e-25 | 710 - 769 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_6753 | 769 | 3e-25 | 710 - 769 | 100 | 60 / 60 | plus |
Contig Sequence (769 bp)
>U35_6753 769 Hv_44K_v2 TAGTGGATCCAAAGGTTGCCTATCTATCTACTTCCCACGCACGTACAAACACTCTCCACA CAGCTAGCCAACAGGTACAACAGACACAAGGATGAAGCTCAGAGTAAAGGGCTTGGGCCT TCTGCTTCTCCTTGTCTTGCTCGCTCTATGCTCCACCATTGATGTCTGCGACGCAAGGAG AGGCAAGCATTGGAGGCCAAGGAGCTCACCGAGCTCCTCTCTGCTCAAGAAGAAAGGGAA GACAAAGAAGGGCAGCTCTCACCGGCAGCACGGGAGCAACCGGCGAAGCCCGCCACCAGG CCCTGCTGTTGGCAAAGGATACCCAAGCCCCAATGTACCTGTAACTCCGAGCCAGAGCCC GAAACCAAGCCCTGCCAAGAGCAATGGACATACAAGTCCACCACAGCCTCCATCTCCAAG CTGTGGAAAGGGCACACAGCCACCGCCGCAGCCACCACCTGCGCCTGTGGCCTCACCGGG CGCGGTATTTAACGTGGTTGACTTCGGAGCCAAGGGTGATGGAGTTTCAGACGATACAAA GGCTTTTCAATCAGCGTGGGCTGCTGCGTGCAAGCAGGGAGCGTCTACAGTTCTCGTACC ATCAGAACTAGAGTTCCTTGTAGGGCCAATCTCGTTTTCTGGGCCTTACTGCAAACCAAA CATTCTTTTCCAGCTGGAAGGAACGATCTTAGCCCCAACAAATGCTAAAGCATGGGGTTC TGGCTTGCTTCAATGGCTTGAATTCACCAAACTAAGTGCATTATCAATT
Homology of Contig U35_6753 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g44970.1 | 539 | 7e-79 | protein|polygalacturonase, putative, expressed |
| Brachypodium v1_2 | Bradi2g44750.2 | 544 | 1e-82 | |
| Arabidopsis v10 | None |