barSeed - Barley Seed Development Database

Probe CUST_27430_PI390587928

Source Contig U35_6758

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27430_PI390587928	Hv_44K_v2	GCAACCTTGTTGTCAAAGAGCTAATGAATTGGGTAATCTATTTGGACGACGAGAAGAAGT	1555	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362299	2866	2e-24	607 - 666	100	60 / 60	plus	ABC09348 ABC13695
MLOC	MLOC_38100.1	4353	2e-24	4094 - 4153	100	60 / 60	plus	ABC09348
MLOC	MLOC_38100.2	4297	2e-24	3933 - 3992	100	60 / 60	plus	ABC09348
MLOC	MLOC_38100.5	3372	2e-24	3106 - 3165	100	60 / 60	plus	ABC09348
MLOC	MLOC_38100.3	4339	2e-24	4002 - 4061	100	60 / 60	plus	ABC09348
JLOC1	JLOC1_24743.1	4157	8e-25	3820 - 3879	100	60 / 60	plus
Harvest21	ABC15856	1474	3e-25	1415 - 1474	100	60 / 60	plus
Harvest35	U35_6758	1615	3e-25	1556 - 1615	100	60 / 60	plus

Contig Sequence (1615 bp)

>U35_6758 1615 Hv_44K_v2
GTCTCTTCAGGCATCAACCCCACAGTAAAACATGTAGACCTGCAACCTGAGGTCAATAGC
ACTTCTCGTACCCTGAGCCTTCCACCTATGCTAAATCAGTATACTGCTCCTGTTCGCCTC
CCTCCTAACAGTATGTCGGAGGATGATAAAATTGCTCTAATGATGCCTGAGCAAGTCCCC
TCTCACACCTTGACCCAGGTCCCACCTTCACAAACACCATTAGTATCACTATCGGCATCG
CCATCGCCACTCTCTCTCACTCAGCTTTTGTCGCTGATTCCACATGATGAGATACGCTTC
AAAATAAGTTCAAAACTTTTATCTCTTGGCTCACAGTTGCAGTTCAGCAAAATCATGGGG
GTGGCTCTGGATAAGGCTATCAAAGAGATAATACTCCCGGTCATTGAAAGAAGTGTCTCA
ATAGCAAGCAAAACTACGAAAGAAATTATTCTGAAGGATTATTCAACGGAATCTGATTAC
AGTGCCGCAAATCGTTCTGCTCGTTTGATGGTTGGGACATTAGCTGGAAGTCTAGCCCAT
GTTACTTGCAAGGAACCGCTCCGTGTTGCACTAAAATCTCATCTTCGAAGCCTTATTCAA
AACCTTACCAGCAACAGTGAAACTGGTGATCAAGTAATCCATATTCTGATCAACGACAAT
TTGGATCTTGGTTGTGCAAGTATCGAGTCGGTAGCTACGCGCAAGGCTGTTGATTCGATT
GAGGGTGAAATAACTCAATCCTTTTCACAACAAAGGAAGAAAAGAGAGGCAGCTGGTCCT
GCATATTATGACTCTTTTACTTATGCTCAAGGTCCATTTGCCCCTGTACCTGAAGTGCTC
CATACTAAGGCAGAGTCTCCTGCCCAACAACGAGTATATGAGGAGTTTGTTCATGTATGG
CAGAGCCATGGCCAAAGTGTTGGTGCTGCAGGTTCTGGTTCATCTGGTACAGCTGCTGTC
TCGAGCAATTTTGGCGTACCTCGTGCTTACAGCCCAAGTTTAGCTCCAGCTTCCAGTGCT
TTCTTGTCTAATCAAACAGCTCCACTTGCATTAACTCAGCCTACAGAGCTGGTGTATGAG
GAATTGATTCCTGGCGCTGCACCACTTTCTAGTGATTCTCCTGCTCAAGTTGGGACCAGT
GACTCTTCTGGCTGGCTTGGTGGAACCATTGGCGATGCATCGACATCTCCTCCATTGATG
TCTAATGACCTTCCTGTGGGAGGAATAACGGATTTAAATGCTATGATGCCACCTCCAGCT
ACAGTTTCTGACAATCTAGGGTCTGCTTTACCAGATCCTTTGAGCACTAGTGATGCTATG
GAAAGATACGAACAAGTTTCGCAAAAGCTGGAAGTCTTGATTGCCAAGGATGGTAAAGAT
GTGGAAATCCAGTCTGTTATTGCGGAAGTTCCTGATATATTACTCAAATGTGTTAACCGG
GATGAGGCTGCATTAGCTGTTGCACAAAAGGTTTTCAAAAGTTTATATGACAACTCATCA
AATAGTGGTTATGTCATGTGTTCTTTAGCAACTTTAGTTGCGATACGGGACGTATGCAAC
CTTGTTGTCAAAGAGCTAATGAATTGGGTAATCTATTTGGACGACGAGAAGAAGT

Homology of Contig U35_6758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g40780.3	2299	8e-162	protein\|CCR4-Not complex component, Not1domain containing protein, expressed
Brachypodium v1_2	Bradi1g78550.2	2353	0.0
Arabidopsis v10	None