barSeed - Barley Seed Development Database

Probe CUST_27428_PI390587928

Source Contig U35_6760

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27428_PI390587928	Hv_44K_v2	TGTTGTACTATGTTATGGGCTATCGTTACTACTCCCTCGGAGTATTGCTATCTATGCATC	1437	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.149	0.134	1.825	3.291	1.013	1.203
Raw	3.141	4.184	84.320	226.960	27.212	33.842

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68610.1	2177	3e-22	142 - 200	98	58 / 59	minus	ABC14510
MLOC	MLOC_68610.2	1821	3e-21	1 - 54	100	54 / 54	minus	ABC14510
JLOC1	JLOC1_45403.1	2146	1e-22	132 - 190	98	58 / 59	minus
Harvest21	ABC14510	1519	3e-25	1438 - 1497	100	60 / 60	plus	ABC14510
Harvest35	U35_6760	1519	3e-25	1438 - 1497	100	60 / 60	plus

Contig Sequence (1519 bp)

>U35_6760 1519 Hv_44K_v2
CCTGATCGAGGCCGCCGCCGCAGCAGGGCTGTCCCTGCCGCACTCACCCTACTGGTACGG
CCTAACCATCGGCGGCCTCTTGGGCACGGGAGCTCACGGCAGCTCGCTGTGGGGGAAGGG
AGGCGCTGTGCACGAGTACGTGGTCGGGATGAGGATCGTAACTCCGGCGCCGGCGAGCCA
GGGGTTCGCGGTAGTGAGGGAGCTCGAAGCCGATCACCCGGACCTGCACGCGGCGAAGGT
CTCACTCGGGGTTCTCGGCGTCATCTCTCAGGTAACCCTGACCATGCAGCCGTTGTTCAA
GCGGTCGGTGACGCTGGTGAGGCGCGACGACTCGGACTTCCAAGAGCAGGTGGCGGTGTG
GGGCGACCTCCACGAGTTCGGCGACATGACATGGCTGCCGCACCAGGGCAAGGTGGTGTA
CCGCCGGGACGACCGCGTGGACGTCTCGACCCCCGGCAATGGCCTCTACGATCTGCTCCT
TTTTCACCCCAGTCCCACCCGCGGGCTCATCGACGCAAGGGTTGCCGAGGAGCGGCTGCA
GGAGAACGGCACCGACGCCGCCCGGTGCGAGGCAGCGGCGCTGCAGGCGGCCACATCCGA
GCGCTCGTCCAACGGTTTCACGAACGACGGCGTTGCCTTCACGGGATACCCGGTGGTGGG
GTACCAACACCGCATCCAGGCATCCGGCGCATGCCTCAACGGGCCAGACGACGGTCTCCT
CACCGCCTGCGCGTGGGACCCGCGCATCCGAGGCTCCTTCTACTACAACTCCGGCTTCAG
CGTCGCGCTCTCGAAGGCGCCGGCGTTCGTCGCCGACATGAAACGCCTCCGGGACCTCAA
CCCGGACTTGTTTTGCGCCGCCGTCGACGCCAGGGTGGGCGTGCTCCTGCGATACATCAA
GGCATCAACGGCTTACCTTGGCAAGCCAGAAGATTCGATCGACATTGACATCGTCCACTA
CCGGAGCCGCACCGACGGCATGCCGCGGGCGCATGCCGACGTGGTGGATGAGATCGAGCA
GATGGCGCTGCACAAGTACGGCGGCCTCCCGCACTGGGGCAAGAACCGCAACTTGGCCTT
CGACGGTGCCATCGCAAGGTACCCGAAGGCTCGTGAGTTCCTTGGTGTGAAAGATAGGTA
TGATCCTGAGGGGCTCTTCTCCAGTGAGTGGACCGACGAGGTGCTCGGTATCAGTGGAAG
CCCCAACATCATCAAAAAGGGTTGCGCCATTGAAGGACTCTGCGTCTGCTCCAATGATTC
ACACTGTGCTCCGGAGCAGGGCTACTTCTGCAGGCCAGGAAAGGTGTACAAGGAGGCTCG
AGTATGCTCATTCATCAAGGATTATTAGGGATGACAAATTTTATTTCCTGCTACTCGCTA
CGCCTATAAATAATGATCCTCTTTCCTTCGTATAATACGCGGATATACGAACTACTCTGT
TGTACTATGTTATGGGCTATCGTTACTACTCCCTCGGAGTATTGCTATCTATGCATCTAT
TTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02230.1	590	0.0	protein\|FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed
Brachypodium v1_2	Bradi3g22060.1	590	0.0
Arabidopsis v10	AT2G46750.1	591	1e-149	D-arabinono-1,4-lactone oxidase family protein \| chr2:19208443-19210909 REVERSE LENGTH=591