barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_27418_PI390587928Hv_44K_v2GTTTTCTTCAGTTCAGTTTTCGTTAGCTGCTGCTGCTGCTACTTCATTTTTCCTCGATGC873GeneList: thistle2
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.6790.9041.2061.0150.8160.993
Raw 974.3042017.6662315.9202938.530852.1951160.927



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_64134.212002e-2465 - 12410060 / 60minus None
MLOCMLOC_64134.114862e-24444 - 50310060 / 60minus None
JLOC1JLOC1_42070.212818e-25955 - 101410060 / 60plus
JLOC1JLOC1_42070.17648e-25438 - 49710060 / 60plus
Harvest21ABC156339583e-25874 - 93310060 / 60plus
Harvest35U35_67719583e-25874 - 93310060 / 60plus



Contig Sequence (958 bp)

>U35_6771 958 Hv_44K_v2
CTCATCAGTGCAGTAGTAGGAGTATTAGATAGCGAGTGGCGTACCAGCCAGCGTACGTGC
GTCCGTGGCGAGGAGATGACGGGGGAGGACGCGGTCATGGCCGCTGCGGCGAGCTCCGAG
TGCAGCAGCGGCTGCCAGTCCGGCTGGACCACCTACCTGGAGGACGACAGCTCCTCCTAC
TCCCGCGGCCACGCGCGGCTCCACCTCCACGCCAAGGGCCGCTCGTCCTGCCACTCCGAG
GAGGCGGAGGAGGAGGACGACCTGTCCATGATCTCCGACGCCTCCTCCGGCCCGCGCCAG
CTTCAGTACTCGCCCGGCTCCGACCAAGGCGCGGCCGCGCTGGCCAAGGCGCAGCGCGCC
GAGAGGAGGCGTCGGACGGCGGAGCCTGCGGCGGCGAGGCGGCAGGGCAAGACAGCCTCC
GCCGCCGCCTCGACTCTGCTCGAGGACACGGCCAGCTCGCCAGCCTTCTTCAACTACTCC
AACCAGGTGATGGGCTCCCCGGAGGCCAATGTCTACGGCGGCGCGGCCGGGTCGGCGATG
GAGTTCAGCAATACACCCGACTTCTCATCCACCTTCTTCTCCACGACGGGCTTCGAGTCT
CCCTTGAGCGGATCTCCTCTGGGCAGCTACCTGCAAGTGCAGTACTCCCCTGCCCCTACC
AAACCAATGCCCACAAGACAGGGGTGCAGAGACGGAGGTGACAAGATCGGGAGGTGGTGA
GGCCGTCGCCGTTGGCCGCCGTTACGCGGCTGCTCTGCTCCGTTGTGTTCTCGGAAGCCG
AGAGGAGGCGGGCAGCTAGGAGAATAGAATAGAACGAGTTTGCGTTGCGTCGCGTCGCGT
CGCGAGAGTCTCTCTTTCAAGTCTTGAGGCTGAGTTTTCTTCAGTTCAGTTTTCGTTAGC
TGCTGCTGCTGCTACTTCATTTTTCCTCGATGCTCTGCGCCTGTGTCCGTCCAAAAAA



Homology of Contig U35_6771 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None