barSeed - Barley Seed Development Database

Probe CUST_27416_PI390587928

Source Contig U35_6773

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27416_PI390587928	Hv_44K_v2	ATTGTATATGTCCGGGTCAGTCTGCGGACACTAATGTGAAAATTGGCCATTCAACGGCAT	1180	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.228	2.436	1.079	0.855	0.447	0.413
Raw	35.642	61.463	23.073	27.500	3.454	4.210

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_7930.1	2385	6e-21	2333 - 2385	100	53 / 53	plus
Harvest21	ABC14964	830	3e-25	766 - 825	100	60 / 60	plus	ABC14964
Harvest35	U35_6773	1245	3e-25	1181 - 1240	100	60 / 60	plus

Contig Sequence (1245 bp)

>U35_6773 1245 Hv_44K_v2
GTCCTCAGGAGGACTCCATTCTCTGATAGTTTATTCACCTCTTCACTTTATGATAGACCA
GTGTGGCCTGCAGGAAATGCCAGTGCTAGGCAAGATTCATCAGTGATGCAACGGACTAAT
TCAGACAGAAGTTCCGAACCGCAATCAGAACCTTCAACTAGCATGTATAATTCTGGCTCT
GCAACTCTAAGAGAGGCCAGCAATCGGGATCTTCTTGAGCGCAGATCAGCTTTTCTTGAA
AGGAGGAGGAGGATACGATCCCAGGTCCGAGCCCTCCAAAGGTTGGGCAGCAGGTTCGAA
AACTTATCAGGTCATGAGAGATCATGCATTCTATCTGGTCAGCATAGAACAGGAAATTGC
AACTGCAGGGCAAGCAGTCGACCAGGTAATCCTGATGAAGAATCCGGCACAAGGGCTAGC
ATATCAAGAATTGTTATGCTAGCAGAAGCACTCTTTGAGGTCCTGGATGAAATCCACCCA
ACAGTCTGCTGCTTTATCCTCAAGGCCATCATTTCCTTCAATTGGATCCGTTCCTGCTCC
AAAGGAGATCGTCGAGAGTCTTCCTGTCAAGGTGTACAAAAAGCCGTTGAAACACCAAAC
TGATGAGACTGCTCAATGCTATATTTGCCTTGTTGAATATGAAGAGGGAGACTGTATTCG
CATACTTCCATGCAATCATGAGTTTCATCTAACATGTGTAGATAAGTGGCTGAAAGAGAT
TCACAGGGTTTGCCCACTTTGTCGTGGTGATGTTTGCCGATCTGATTCGTCGAGCGTAGG
GAAATTCAGCTGATTCTTTTATCTCTTAAGGATCCAGCTTCTTGCGAGAAAAATGGAGCT
TCCGAAATTGTTCTTTGACCCAGGCGGATAGAGCCTGCACAATGTTGCGGGTGTAATTCC
ATCTTCATTAGTCTGGTCCGAACAACTCAGGATGCTCCTGTATGTTATGGCAGATTTACA
TGGCAGTCATCCCATTATAAACGATGAACTGACATGTGAATTTGAGATTGTTGTACGGTG
GTGTGAAGCTTTGTTGATGTTGATATATTGGTTATATATATGGCCTGCGTTTTGGTGATG
TCTGAAATTAGCGTGATGTTGACAATCTCTTCAGATCCTGCGTCAGGGCAAACTGTCAAA
CTGTGTCAGGGCATCTCCAACGCTATCCCCCAAAATAGATATTGTATATGTCCGGGTCAG
TCTGCGGACACTAATGTGAAAATTGGCCATTCAACGGCATCATCT

Homology of Contig U35_6773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g32350.1	550	2e-106	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi2g26690.1	526	2e-118
Arabidopsis v10	AT5G45290.2	546	7e-58	RING/U-box superfamily protein \| chr5:18350011-18352092 REVERSE LENGTH=546