- Probe CUST_27415_PI390587928
- Source Contig U35_6774
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27415_PI390587928 | Hv_44K_v2 | GCAAGACAAATCCAATTTATCGTGGTGGGGTACAAATTTGATAATTCACTTGTCCAAAAA | 370 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.848 | 1.572 | 1.808 | 1.220 | 0.440 | 0.336 |
| Raw | 718.757 | 2017.884 | 2089.877 | 2193.989 | 279.604 | 234.677 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_5438.2 | 4727 | 3e-22 | 4470 - 4525 | 100 | 56 / 56 | plus | ABC18416 |
| MLOC | MLOC_5438.1 | 4637 | 3e-22 | 4382 - 4437 | 100 | 56 / 56 | plus | ABC18416 |
| JLOC1 | JLOC1_3500.1 | 4623 | 1e-22 | 4368 - 4423 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC43999 | 204 | 3e-25 | 6 - 65 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC18416 | 381 | 5e-23 | 303 - 358 | 100 | 56 / 56 | plus | ABC18416 |
| Harvest35 | U35_6774 | 442 | 3e-25 | 371 - 430 | 100 | 60 / 60 | plus |
Contig Sequence (442 bp)
>U35_6774 442 Hv_44K_v2 GCGCTGCGTGCAGGAAGCGCTGGACGGGCCGGGTCAGGGCGGACGACCATCATCGTGGTA GCGCACCGGCTGGCTACGGTGCGGAACGCGCACACCATCGCGGTCATCGACGACGGCAAG GTGGTGGAGCAAGGGTCGCACTCGCACCTGCTCAACCATCACCCCGACGGATGCTACGCG CGGATGCTGCAGCTGCAGCGCCTCACGCCCCACACCGTGGCCATGCCCGTTCCCGGACCA TCTGCATCCAACGTTTGATACAATCTTCCATGCACGCTTCTGCTCGCGTTTTTGTTTTAG GATCTTCATTTCTCTTATCATTGGTTTCTGGCGGGATGACAAGCCGTGTGTGCTGCCATG ATGTTACAGCGCAAGACAAATCCAATTTATCGTGGTGGGGTACAAATTTGATAATTCACT TGTCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_6774 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |