barSeed - Barley Seed Development Database

Probe CUST_27414_PI390587928

Source Contig U35_6775

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27414_PI390587928	Hv_44K_v2	CTGGCGAGCATATCTATTTTGTAGTGTTACACAGAAATGCACCATGTTTTTCTTCAAAAA	838	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69639.1	5134	9e-22	31 - 85	100	55 / 55	minus	ABC16509 ABC16521 ABC17771
JLOC1	JLOC1_46161.2	4834	5e-22	4646 - 4700	100	55 / 55	plus
JLOC1	JLOC1_46161.1	5238	5e-22	5050 - 5104	100	55 / 55	plus
Harvest35	U35_6775	910	3e-25	839 - 898	100	60 / 60	plus

Contig Sequence (910 bp)

>U35_6775 910 Hv_44K_v2
CAGACACATTCAGCCTTGGGGTGTGCAATGGGTGTCAGCTCATGGCTCTTCTTGGTTGGG
TACCAGGACCCGATATTGGAGGCTCGCTTGGTGCAGGTGGAGATATGTCCCAGCCAAGGT
TCACTCACAATGAATCTGGCCGTTTTGAATGTCGGTTTATCAGTGTGGCCATAGGGGATT
CCCCTTCTATAATGTTCAAAGGTATGGAAGGCTCTACATTGGGCATTTGGAGTGCTCATG
GTGAAGGTAGAGCCTTCTTCCCAGATGGAAATGTCTTATCTGATGTTGTCAAATCTAATC
TGGCCCCTCTGAGGTACTGCGATGATGCTAATAACGTCACAGAGGTCTATCCTTTCAACC
CTAATGGCTCTCCGCTTGGTATTGCGGCCCTTTGCTCCCCCAATGGAAGGCACCTTGCTC
TGATGCCGCACCCGGAGCGTTCCTTTATGATGTGGCAATACCCATGGTATCCCAAGGATT
GGCAGGTTGAGAAGAGTGGTCCTAGTCCTTGGTTGCGCATGTTCCAGAATGCAAGAGAAT
GGTGTTCATAGATAAGGGACCAAATTGGTGGCCCGTATGTCTGCCTAGCGTATGTCTGTA
AAATTATCGCGCTGGAAGAACTCAAGTGACAGACAGCAGTTCTCAGTTCTTGAGTTGAGC
TGGAATATCTGTGCTACTTATTCTCTATTGGACAGTGCCTGTATAAGCGCTGCCTGCGAG
CATAGTTATGTTTCACTAGCTGAATTGAGCTACATGATTCCGCAATTATTCACCTTTATC
CAATAATACCATGCTCTAGCTGTCCGGCTACATAAAATGTATCCTGTCAGCTTTCTTTCT
GGCGAGCATATCTATTTTGTAGTGTTACACAGAAATGCACCATGTTTTTCTTCAAAAAAA
AAAAAAAAAA

Homology of Contig U35_6775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01440.1	1416	4e-115	protein\|phosphoribosylformylglycinamidine synthase, putative, expressed
Brachypodium v1_2	Bradi3g28650.1	740	4e-128
Arabidopsis v10	AT1G74260.1	1407	1e-97	\| Symbols: PUR4 \| purine biosynthesis 4 \| chr1:27923005-27927764 REVERSE LENGTH=1407