barSeed - Barley Seed Development Database

Probe CUST_27409_PI390587928

Source Contig U35_6780

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27409_PI390587928	Hv_44K_v2	GTGTACGATGAGGGATACGACCTTATTAAAATTATTACAGGGAAACGTTTTGGGTTAAAA	859	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.416	2.262	1.046	0.713	0.529	0.788
Raw	89.181	125.657	52.992	57.122	14.760	24.995

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74540.2	1468	7e-23	550 - 606	100	57 / 57	minus	ABC10546 ABC18313
MLOC	MLOC_74540.1	1640	7e-23	550 - 606	100	57 / 57	minus	ABC10546 ABC18313
MLOC	MLOC_74540.3	1442	7e-23	453 - 509	100	57 / 57	minus	ABC10546 ABC18313
JLOC1	JLOC1_49673.2	1525	4e-23	812 - 868	100	57 / 57	plus
JLOC1	JLOC1_49673.1	1579	4e-23	863 - 919	100	57 / 57	plus
Harvest21	ABC18313	911	8e-21	860 - 911	100	52 / 52	plus	ABC18313
Harvest35	U35_6780	932	3e-25	860 - 919	100	60 / 60	plus

Contig Sequence (932 bp)

>U35_6780 932 Hv_44K_v2
GAAGATTTTAGCGCTCTAGGAGAAATGCGGAAAACTGTACTTAATCTAACTGCTCCAACT
CAACTGGTCAAGGAGCTGAAGGAGAAGATGCTAAGCTCTGGAATGCCCTGGCCTGGGGAT
GAAAGTGACCACCGCTGGGAGCAAGCATGGATGGCAATTAAAAAGGTTTGGGCATCAAAA
TGGAATGAAAGAGCATATTTTAGCACACGCAAGGTGAAGCTCGATCATGATTACCTTTCC
ATGGCTGTTCTTGTACAAGAAATTGTCAACGCAGACTATGCCTTTGTTATTCATACTACA
AACCCGTCATCTGGAGATTCTTCCGAGATATATGCTGAAGTGGTAAAAGGACTTGGAGAG
ACACTTGTGGGAGCTTATCCTGGCCGTGCCATGAGCTTCGTGTGTAAGAAAAATGGCCTT
GACTCTCCCAAGACTCTAATGGTGAGGATCTGGAAGGTTATGCTGGAGCAGGGCTGTATG
ATAGTGTCCCTATGGATGTGGAAGACGAGGTTGTACTTGACTACACCACTGACCCTCTCA
TCACTGACTCGGGATTCCGGAACTCAATCCTCTCAAGCATTGCACGGGCTGGCCACGCCA
TCGAGGAGCTCTATGGGTCACCGCAGGACGTTGAGGGAGTAGTGAAGGATGGGAAGATCT
ATGTAGTCCAGACAAGGCCACAGATGTAATATGTATGTATAGGCAGCTCAAGTTGTAGAG
TAGTACGATATATGGCCCTTTCTGGCATGTATAGTTGTACTCATAGATGCACAACACTTC
TACGTTGTTATTTATTTTTGCATATACGCTCAAAATAAGCTTTGATCACATACTGTATTT
CGTAGGCACCAGAAAGTGTGTGTACGATGAGGGATACGACCTTATTAAAATTATTACAGG
GAAACGTTTTGGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g30310.1	1426	3e-111	protein\|alpha-glucan water dikinase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g41907.2	1456	5e-114
Arabidopsis v10	AT1G10760.1	1399	4e-102	\| Symbols: SEX1, SOP1, SOP, GWD1, GWD \| Pyruvate phosphate dikinase, PEP/pyruvate binding domain \| chr1:3581210-3590043 REVERSE LENGTH=1399