barSeed - Barley Seed Development Database

Probe CUST_27405_PI390587928

Source Contig U35_6785

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27405_PI390587928	Hv_44K_v2	GACTCAAAAATGCAATGTCATCCACAAGATCTTTTTCTTTGTTCCAATTGATGCAACTAC	597	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365877	3243	2e-24	3056 - 3115	100	60 / 60	plus	ABC15285 ABC45736
MLOC	MLOC_42045.1	383	2e-24	181 - 240	100	60 / 60	plus	ABC15285
JLOC1	JLOC1_27292.1	374	8e-25	186 - 245	100	60 / 60	plus
Harvest21	ABC15285	1032	3e-25	832 - 891	100	60 / 60	plus	ABC15285
Harvest35	U35_6785	795	3e-25	598 - 657	100	60 / 60	plus

Contig Sequence (795 bp)

>U35_6785 795 Hv_44K_v2
TACACCCAGATTTGTTTTTAAAAAGTAATGTACTCACATGAGAAGCGGTCTACTATATGC
ACCAAGAACTCCAGCCAATCAGGTCGGTAGAGTTCTGTTGGTATGGCAGCTACTGATTTC
TTTGCTGAAGTGAGAACATTGATACCTTTTTGGAGTAATTATGTGCCTTTTGGAGAATTG
TTATTTTTCTTGTACCAATTATTTCTGGATGTACCGATCATTATCATTCAATGTTAATAT
TGTTCATAATATAGGTTGATTCCAAAGTAGTTTTAAAGACTTCAATATATCCCAACAAGC
GGAATGTTGCGTTTGGTACTATTCGGAGTACTGGTCCAAGAACCAAGGCTGGTGGTATCG
AGTTAGGTGCTGAATTTTCCCTTGTGTGCATTGATCAACCTGTTATTGATAATGAGGAGT
TGGTAAGGGAAGTTTCTGATTGCAAGGCAATTGGTGATGCTTTCTCTTAAGGATACTTAA
TTGCCTGGCCTTTAGCTTTTATTTGAGAGAAGGACAATTGAGTTGCAGCCGAATTCTTGG
ATCAAGAAGCATTTTTTCAAGAATTTAGCTACTAATAGTCATAGTTTTACATTGATAGAC
TCAAAAATGCAATGTCATCCACAAGATCTTTTTCTTTGTTCCAATTGATGCAACTACTAT
GTTGTAATATTCTCCATAGTTGTGTTTTATATGCTAAAAAAGATATGAATGGTATCTTTA
TTGTAATGCATATGTATCATACACTCTTGTATATTTGTAATAAATATCTTCATATTTCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_6785 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None