barSeed - Barley Seed Development Database

Probe CUST_27402_PI390587928

Source Contig U35_6788

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27402_PI390587928	Hv_44K_v2	AAGGTAGAACATCATCATCACTACTTATAAATATCTGGTTGGGCACGAAAGCAGCTATTA	1262	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.558	1.850	1.171	0.779	0.605	0.629
Raw	55.219	103.362	57.422	58.602	15.973	18.299

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63302.1	3253	2e-24	775 - 834	100	60 / 60	plus	ABC03476 ABC03477
MLOC	MLOC_63301.1	4781	2e-24	2006 - 2065	100	60 / 60	plus	ABC03476
JLOC1	JLOC1_41451.1	3217	8e-25	2343 - 2402	100	60 / 60	minus
JLOC1	JLOC1_41450.1	2354	8e-25	1998 - 2057	100	60 / 60	plus
Harvest21	ABC03476	3313	3e-25	2057 - 2116	100	60 / 60	minus	ABC03476
Harvest35	U35_6788	1362	3e-25	1263 - 1322	100	60 / 60	plus

Contig Sequence (1362 bp)

>U35_6788 1362 Hv_44K_v2
GGCGAAGGGTGAATCCCTTTTGAGTCGCAGTTTTGAAGAATTGGAAGAGATTACTGGCTA
TCTGGAATGCTGTGGTGTTAGGAGAGACTGGATTGGTCATGTGGTCAGTAGATGTCCACA
GCTATTGGATTTTTCCTTGGCTGAGTTAGAGACACGAGTGCGATTTTATACAGATATGGG
AATGAATGAGAATGACTTCGGCACTATGGTCTATGATTATCCAAAAGTTCTTGGGTTTTT
CAGCCTAGAAGAGATGAACAGTTCAATATCTGAAAGAGTTTGGTTTGAGCACAGAAGAAC
TTGGAAAAATGCTGGCTTATAAGCCACAGCTCATGGCCTGCAGCATAGAAGAAAGGTGGA
AGCCACTTGTGAAGTACCTATATCGTTTAAACATTTCACGGGATGGTATGAAGCGTATGT
TGGTGGTCCAACCTACGATTTTCTGTCTTGACTTAGAGACAGTAATTGCACCAAAGGTAC
AATTTCTTCAGGATATTGGTGTGAGGAATGATGCAGTCGGCAATGTGCTCGTGAAGTTCC
CCCCTGTACTAACTTATAGTCTGTACAGGAAGTTACGCCCAGTGATTATATTCCTGAGGA
CAAAAGCTGGAGTAACAGAGGATGACATTGGTAAGGTCATTGCGTTGGACCCGCAGCTCA
TGGGCTGCAGCATCACACACAAACTGGAAGCCAGCGTCAAGTACTTCCGGTCACTGGGCA
TCTACCACTTGGTACTCGGTCAGATGGTTGCTGACTTCCCGACGCTCCTCCGATACAATG
TGGATGTTCTAAGGCCAAAATACCAGTACCTTAGGCGCGTCATGGTACGGCCGCTGAAAG
ATCTGATCGAGTTCCCCCGGTTTTTCAGCTACTCTTTGGAGCACAGGATAGAGCCTCGGC
ACAGGGTTCTGGTGGCCAACAGGATAAACATGAAGCTGCGCTACATGCTGCCTGGTTCCG
ATGAGGAGTTTGCGCAGAGGGTGCGAGAGGCCGTCGAGAGGAGAGCGAGGTTTGAAGCCG
GAGAGGCTACTCTAGAGACATCAGGTGCGCCAGAAACACCCAGCGGCAACGGAGATGGCG
CAGCAGCAGCGTGTCAAAAGATTGAGGCATAACAGACGGTATCTTTCAAGAAACAAGAAA
TCCATGTCGTTGACTTGTACATATTCCTGTGCCACGTTTGCGGACTGTGTCCTTTAGCAG
TGTTGGCGGTGCTCACTGTGAGCCTATTTGATGCTACTCAATTTATTTTATTTTGCATAA
GTAAGGTAGAACATCATCATCACTACTTATAAATATCTGGTTGGGCACGAAAGCAGCTAT
TATAAAATTTCATTTACACCAAGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g04230.1	609	2e-148	protein\|mTERF domain containing protein, expressed
Brachypodium v1_2	Bradi1g57920.1	609	5e-160
Arabidopsis v10	AT2G21710.1	641	2e-119	\| Symbols: EMB2219 \| Mitochondrial transcription termination factor family protein \| chr2:9270886-9273307 FORWARD LENGTH=641