barSeed - Barley Seed Development Database

Probe CUST_27401_PI390587928

Source Contig U35_6789

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27401_PI390587928	Hv_44K_v2	GGATACGGCGACAAGGTCAGCGGCATCGCGCTCCTGCACACCTACTTCTGGGGAAAAGAG	677	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355807	2449	2e-24	685 - 744	100	60 / 60	plus	ABC19755 ABC43911
Harvest21	ABC14354	736	1e-24	678 - 736	100	59 / 59	plus
Harvest35	U35_6789	737	3e-25	678 - 737	100	60 / 60	plus

Contig Sequence (737 bp)

>U35_6789 737 Hv_44K_v2
GTGCTGTGGCTGTGTTCCTCGTCGCCCCGCTTGCCGCTTTGCTCTTGCAGATTCGGATCA
CGGCCTCAAGCGCCGTGACCACGAGCCAAAGGTCGCTGCCGACGGCCGCAACTGCAGCCA
TGGACGACCCCGGCTCCGAGATCGAGTACGAGATACCCGCCGTCGTGCGTGTGCACAAGA
GCGGCCGCGTCGTGCGCTTGAACGGCACCGACACCGTGCCTCCCTCCCCGTGCGGTGACC
CAGCCAACGGCGTCTCCTCCAAGGACGTCGTCCTCGACCCGGCGGCAAACATCTCTGCCC
GCCTCTACCTCCCCGCCGCCGCCGCGGCGGAGCCCGGCAAGAAGCTCCCTGTGGTCGTGT
TCTTCCACGGCGGCGCCTTCATGATCCACACCACTGCCTCCCCGCTCTACCACAAGTACG
CTGCCTCCCTCGCCGCCGCGGCCCCCGCCGTCGTCATCTCCGTCGACTACCGCCTCGCCC
CGGAGCACCCTGTTCCGGCCGCCTACGAGGACGCCTTCGCGGCCCTCAAGGCCGTCGTCT
CCTCGTGCCGGCCGGGCGGCGCCGAGCCCTGGCTCGCCGCGCACGGCGACGCGTCCCGCG
TCGTCCTTGCCGGCGACAGCGCCGGGGCCAACATGGCGCACCGCACGGCCGTCAGGCTGC
GGAAGGAACGCATCGAGGGATACGGCGACAAGGTCAGCGGCATCGCGCTCCTGCACACCT
ACTTCTGGGGAAAAGAG

Homology of Contig U35_6789 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28730.1	369	6e-110	protein\|gibberellin receptor GID1L2, putative, expressed
Brachypodium v1_2	Bradi4g32330.1	323	4e-115
Arabidopsis v10	AT3G48690.1	324	8e-56	\| Symbols: ATCXE12, CXE12 \| alpha/beta-Hydrolases superfamily protein \| chr3:18037186-18038160 REVERSE LENGTH=324