barSeed - Barley Seed Development Database

Probe CUST_27400_PI390587928

Source Contig U35_6790

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27400_PI390587928	Hv_44K_v2	GGGGAATACAGCGAATGTTTCATTGCGGTAGTATGTTCATGTTTACCGTTTCCTGTCAAA	671	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.529	2.052	1.207	0.835	0.367	0.495
Raw	3034.953	6223.440	3278.547	3562.587	547.228	808.987

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_46431.1	1427	4e-23	1282 - 1338	100	57 / 57	plus
Harvest21	ABC16128	745	3e-25	15 - 74	100	60 / 60	minus	ABC16128
Harvest35	U35_6790	745	3e-25	672 - 731	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_6790 745 Hv_44K_v2
AACTCGTTNTGGTGCATGGATCAGCCGAAGCTACTGAACATTTGAAAATGCATTGTGCAA
AAAACTCTGACTTGCATGTTTATGCTCCTCAGTTAGAAGAAACGATTGATGTAACATCAG
ATTTATGTGCTTACAAGGTACAACTTTCTGAGAAGTTAATGAGCAATGTCATTTCTAAGA
AGTTGGGTGAGCATGAAATTGCATGGGTTGATGCAGGGGTTGGAAAGGCGGATGAGAAGC
TCAGTTTGGTACCCCCCTCATCAATTCCAGCAGCCCACAACTCAGTTCTTGTGGGTGATC
TGAAATTGGCTGATTTCAAGCAATTCCTAGCAAATAAAGGTTTACAGGTTGAGTTTGCTG
GGGGTGCTCTACGGTGCGGTGAGTACATCACCGTGCGCAAGATTGGTGATTCTAACCAAA
AGGGTAGCACGGGCTCTCAGCAGATTGTGATTGAGGGCCCGCTGTGCGAGGACTACTACA
AGATCCGCGAGCTCCTTTATTCACAATTCTTCTTGTTGTAGAGGGCAAGCGCTGCGCCAT
TGTTGTGTGTTGTACAAACGACCGGTGAATAGACAAGTGGAAACCACCTGTGACTGCAAG
TAGTTGACTTCATGATGATGTTTATTTTTATCGTTGTAATACGTAATGAAGGGGGGAAAC
TAAATTTTGTAGGGGAATACAGCGAATGTTTCATTGCGGTAGTATGTTCATGTTTACCGT
TTCCTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6790 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39590.1	739	4e-104	protein\|metallo-beta-lactamase, putative, expressed
Brachypodium v1_2	Bradi2g00840.1	739	4e-107
Arabidopsis v10	AT5G23880.1	739	4e-75	\| Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 \| cleavage and polyadenylation specificity factor 100 \| chr5:8052550-8058147 FORWARD LENGTH=739