barSeed - Barley Seed Development Database

Probe CUST_27395_PI390587928

Source Contig U35_6795

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27395_PI390587928	Hv_44K_v2	TTCGAATGTGTTGTGGCAACAAACACGTTAAGAGCGCAAACTGAAAACAAAATGTATGTT	671	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.008	1.812	1.023	0.800	0.300	0.226
Raw	2597.177	3654.683	1805.933	2222.642	295.233	240.449

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248873.1	1101	2e-24	938 - 997	100	60 / 60	plus	ABC14434
MLOC	MLOC_62203.1	1760	2e-24	1453 - 1512	100	60 / 60	plus	ABC14434
JLOC1	JLOC1_40687.1	1159	8e-25	951 - 1010	100	60 / 60	plus
Harvest21	ABC14434	769	3e-25	672 - 731	100	60 / 60	plus	ABC14434
Harvest35	U35_6795	769	3e-25	672 - 731	100	60 / 60	plus

Contig Sequence (769 bp)

>U35_6795 769 Hv_44K_v2
GGAATATCCCTCAGTTGAGGCAGAGCAAGAGAAGTTTGACGTGGAAGAACAGGATGCCGA
GCCAAAAGAGCAGCAGTTCCAGCAGCCTCGGCGGTCTCATCAGAACCAGCGTGGTGGTGG
TCGTGGCAGGAGGGGTGCCTACCCCAATGGCCGGGGTTGGCGTGGAGGCAGCCGTGGATA
CCAGGGTGGCGGGTACCAGAATGGGCGTGGATACCAGGGTGGAGGTGGTGGATATCAGGC
CGGTGGTGGAGGGTACCAGAATGGCCGGGGTGGCGGCGGTGGTGGTGGGTACTACAACAA
CAACGACGAAGGGTACTACCAGCCGAGGAACTTCAACAACAGGGGCAGGGGTGGCCGGTC
TGCCCAGGGAGGCGGGCACGCCTACGCTGAGAGGGTCGAGGCAAACGCCTAGTTGTGTTA
TTTTGCTTGGGGTCAAAGGTCATGAGAGGGAGAAGAGTCTGGGAGCCATTTTGTTATTAT
AGAACTAACTTAGCCTGTTATTATGTCTGCAATCCATCCGCCCCCCATCTGTGAGTTGGT
TTTGTTGCTCCAATCCAGTGACTGCATATGGTTGGTCGATAAATGTGGAATCTTCGTCCA
AAGTAGCTTCAGGTCATGTTTGTTGGTTCCCTTGCCTTTTCTTTTTCTGTATGTGTGAGT
GTTTTTACTGGTTCGAATGTGTTGTGGCAACAAACACGTTAAGAGCGCAAACTGAAAACA
AAATGTATGTTTTTTTTTGAAAAAACTTGTCTAGCAGCCATTTTGAGGT

Homology of Contig U35_6795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None