- Probe CUST_27393_PI390587928
- Source Contig U35_6797
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27393_PI390587928 | Hv_44K_v2 | ACTTGCAAATTTGGTGACTCATTAGCTGCCGACAAGACCAATGAATATTTATTATCGTCT | 894 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.622 | 1.457 | 1.352 | 0.582 | 0.203 | 0.338 |
| Raw | 89.706 | 120.729 | 100.920 | 64.446 | 8.630 | 15.651 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK362909 | 2442 | 2e-24 | 940 - 999 | 100 | 60 / 60 | plus | ABC14887 |
| MLOC | AK371115 | 2615 | 2e-24 | 1160 - 1219 | 100 | 60 / 60 | plus | ABC14887 |
| MLOC | MLOC_73357.8 | 2133 | 2e-24 | 523 - 582 | 100 | 60 / 60 | plus | ABC14887 |
| MLOC | MLOC_73357.6 | 1701 | 2e-24 | 686 - 745 | 100 | 60 / 60 | plus | ABC14887 |
| MLOC | MLOC_73357.2 | 2186 | 2e-24 | 922 - 981 | 100 | 60 / 60 | plus | ABC14887 |
| MLOC | MLOC_73357.3 | 2180 | 2e-24 | 916 - 975 | 100 | 60 / 60 | plus | ABC14887 |
| MLOC | MLOC_73357.4 | 2611 | 2e-24 | 922 - 981 | 100 | 60 / 60 | plus | ABC14887 |
| MLOC | MLOC_73357.10 | 1634 | 2e-24 | 367 - 426 | 100 | 60 / 60 | plus | ABC14887 |
| MLOC | MLOC_73357.9 | 1273 | 2e-24 | 367 - 426 | 100 | 60 / 60 | plus | ABC14887 |
| MLOC | MLOC_73357.7 | 1995 | 2e-24 | 471 - 530 | 100 | 60 / 60 | plus | ABC14887 |
| MLOC | MLOC_73357.5 | 2006 | 2e-24 | 767 - 826 | 100 | 60 / 60 | plus | ABC14887 |
| JLOC1 | JLOC1_48841.4 | 1980 | 8e-25 | 244 - 303 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48841.3 | 2379 | 8e-25 | 643 - 702 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48841.2 | 2378 | 8e-25 | 649 - 708 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48841.1 | 2372 | 8e-25 | 643 - 702 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14218 | 954 | 3e-25 | 895 - 954 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_6797 | 954 | 3e-25 | 895 - 954 | 100 | 60 / 60 | plus |
Contig Sequence (954 bp)
>U35_6797 954 Hv_44K_v2 CGCCGACTTCTGCCCCGGGGGCGGCGGCGCCGAGGACGACGAAGGGGGCTGCTCCCCGCC GACGCCGGCGGACGGGGCCGCGGAGGCCGGGGTGCTGTACAAGTGGACCAACATCGGCAG GGGCTGGCGCCCGCGCTGGTTCGCGATCCGCGGCGGCGTGCTCGCCTACTCGAAGATCCG CCGCCGCGTCGCGGCCGAGGAGGCCACGCTCGAGCCCGCCGCGGGCGCGGGCGTCAGGGT GATCGGCGGCGCGGACCGCGGCGCCGGGGAGCGGCCCATCGGATTCGTCCATCTCAAGAT TTCATCATTTAGCGAAAGTAAATCAGATGACAAGCGGTTCTATATCATTACCCCAACCAA GACACTTCAGCTGAGGACAGGTTGTGTTAAGGACCGTGTGGCTTGGATTGAAGCACTTGT TTCAGCGAGAAGTGAATATTCTCTTGGTGCTATTTTGCCAAGTGAACGGAATGGTGGATC ATTCTCTACAGAAAAGCTAAGAGATCGCTTGCATGCTGAAGGTGTTGGTGCAGAAATTGT TAAAGACTGTGAGCAGATAGTTCATTCGGAATTTTCACAGTATCATGTACAGATGAAGCA GCGCTGTGAATCGTATTTAAGCTTTATTGGCAGTCTTCCACGGGAACTTGAGTTAATTCA GAAGATGCAACTATTCATGGCAATCCACAGTCGCAGTTGTTCAAGCCTGACCTTTCCAGC TCCGGAAAATGTAGTGAATACAGCAATACAGAATCTTCTGATGATGCTGGTAAACAAGAA ATAGGGATAATGTCAGATGAAGACGAGTTTCATTTCTATGATACAAGACAAAGTTTTAGC GAGGGTGTGGCTAGTCCTGACTTGAAAGTGAGATACTTAAATTATGAGAATGAAACTTGC AAATTTGGTGACTCATTAGCTGCCGACAAGACCAATGAATATTTATTATCGTCT
Homology of Contig U35_6797 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g40590.1 | 743 | 1e-114 | protein|oxysterol-binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g33020.1 | 716 | 6e-116 | |
| Arabidopsis v10 | None |