barSeed - Barley Seed Development Database

Probe CUST_27392_PI390587928

Source Contig U35_6798

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27392_PI390587928	Hv_44K_v2	CATTGTCTATTTGCTGTTTCTTGTACATGATGGTCGCTGTTGTTATTGTTGGGATTGTAC	996	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365734	2464	2e-24	1075 - 1134	100	60 / 60	plus	None
MLOC	MLOC_72026.3	2167	2e-24	1343 - 1402	100	60 / 60	minus	None
MLOC	MLOC_72026.1	2197	2e-24	1448 - 1507	100	60 / 60	minus	None
MLOC	MLOC_72026.2	2588	2e-24	1361 - 1420	100	60 / 60	minus	None
JLOC1	JLOC1_47909.1	2256	8e-25	837 - 896	100	60 / 60	plus
Harvest21	ABC15668	970	3e-25	909 - 968	100	60 / 60	plus
Harvest35	U35_6798	1059	3e-25	997 - 1056	100	60 / 60	plus

Contig Sequence (1059 bp)

>U35_6798 1059 Hv_44K_v2
CTCAATCCTTCTTTGACTCGCGATATTCCTCCTCCTCCTCCTCACGAAACCAACACTTGC
GTCGCTTTCTCGCCGCCCAATCCCCGCGTAAACCGCCGGAACCCGATGCCCTTATCCGCC
CTCTGATCGAGACTCCCTGGCTCTCGGCGTCGGCAATCCCACCCCCGATGGCATTGCAGA
TTGGCGGCGGCGGCGGCGGGTTGCGGGGCCTGATGCGACGGAAGCCGGTCGACTCCGACA
GGGCCCGCGCCGAGGGGCAGCAGCAGCAGCTCGCCAAGGAGCTCAACGTCCTCGAGCTGG
TCGCGATCGGGGTTGGTTCGACAATTGGAGCTGGAGTATATGTTCTTGTCGGAACAGTTG
CCAGGGAGCATGCTGGTCCAGCATTGGCAGTTTCGTTCCTGATAGCTGGAATAGCTGCTG
CACTTTCAGCATTCTGTTATGCCGAGCTTGCTAGCCGTTGCCCCTCTGCTGGAAGCGCCT
ATCACTATTCATATATCTGCATTGGCGAAGGCGTTGCCTGGCTGATTGGCTGGTCTTTAG
TGCTGGAATATACTCTTGGCGGATCTGCTGTTGCCCGTGGCATATCCCCCAATTTAGCCT
TGTTTTTTGGAGGACCAGATAGCTTGCCATGGATTTTAGCACGGCATCAACTTCCATGGT
TTGACATTATTGTTGATCCCTGTGCTGCTGCTCTTGTTCTTGCTGTCACTGCTTTATTAT
GCCTAGGGATAAAAGAGAGCTCGTTTGTACAAGGGATTGTGACCATTCTGAATGCCTGTG
TGATGCTATTTGTGATAATAGCAGGTTGTTATATTGGTTTCCAGATTGGATGGGATGGCT
ATAAGGTCACTGACGGGTATTTTCCGTACGGAGTAAATGGAGTGCTTGCTGGATCAGCAA
CTGTTTTCTTTGCATACATCGGCTTTGACACAGTAGCCAGTACTGCTGAGGAGGTGAAGA
ACCCACAACGAGATCTACCTCTGGGAATAGGAGCAGCATTGTCTATTTGCTGTTTCTTGT
ACATGATGGTCGCTGTTGTTATTGTTGGGATTGTACCGT

Homology of Contig U35_6798 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g45170.1	640	3e-161	protein\|amino acid permease, putative, expressed
Brachypodium v1_2	Bradi1g13440.1	640	2e-173
Arabidopsis v10	AT1G58030.1	635	1e-136	\| Symbols: CAT2 \| cationic amino acid transporter 2 \| chr1:21464185-21468141 REVERSE LENGTH=635