barSeed - Barley Seed Development Database

Probe CUST_27391_PI390587928

Source Contig U35_6799

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27391_PI390587928	Hv_44K_v2	GGCTTTGTTTCAAGATGTGAGATGCTCACATGTAAGAAAACATTTTCGTGGATTTGAAAA	957	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.364	2.012	1.118	0.644	0.208	0.177
Raw	83.408	108.905	54.228	49.269	4.365	3.877

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_42833.1	2239	3e-24	2160 - 2218	100	59 / 59	plus
Harvest35	U35_6799	1030	3e-25	958 - 1017	100	60 / 60	plus

Contig Sequence (1030 bp)

>U35_6799 1030 Hv_44K_v2
GAAAACTTTTCATGCTCCTGAGTTTGTTTACAAGCATTTGCGGCTCAAGCATCCAGAGCT
TGTGTTAGAAGTTACTTCAAAACTCCGGGAGGATATTTATTTCGAAAATTACATGAATGA
CCCTAATGCACCAGGTGGAACACCAGTTATGCAGCAATCTGCAGCAGACAAATCAAGGCG
GAGATCTGACAATGGTATGGATAGTCGTCTGAGATATGACCGTGGCAATCGCAGAGAATA
TGATAGGGCAGATAAAGATGGAGGCAGACATGGTAGAGGTGATGGCTCTCCAAGCCGTGA
TGGACCTGACGATCAGATGTTTGATTCCTTCCGTGGAAGAGGCTCCAATGCTCCTTTTTC
GGCTGAATTCCCTGCTCCACCGATATTGATGCCTGTTCCCGGTGCTGGTCCATTGGGACC
ATTTGTTCCTGCACCTCCAGAAATAGCCATGCATATGCTGAGAGAGCAAGGACCTTCCGC
ATTCGAACCAAATGGCGGACCTCATGGCAACTCAGGAGTGCTTGGATCGATGATGGGCGG
GGGCCCAACACCAATTATAGCCATGCCACCATCTTTCCATCGTGATCCTCGACGTCTGCG
AAGCTATAATGATCTCGATGCCCCTGACGAGGAAGTTACTGTTCTTGACTACAGAAGTTT
GTAGGCTGTGTCCTGTCATACAGGCAATACAGAGGCATAGGAGGAAGATGTGCTATTTTT
TGAGGACGCCTGTAATGTGTTGTCAGATTTAGCTTAAATGGCTGGAACTTGATATTTGCT
ACTATTATGCAGTCACAGAAAAGGATTGAACGTCTATTTGAAACAACATTCTTTGTCTTT
TGAGACGGTATTTAATAATTTGATGTTGTACGTAAATGAATTCGTTTTGGAGATTGGGCT
CCATGAGACGTGTTGTTTTTGAAAAATCTTTTTCTTTTCTTTTGCACATGTACATATGGC
TTTGTTTCAAGATGTGAGATGCTCACATGTAAGAAAACATTTTCGTGGATTTGAAAAAAA
AAAAAAAAAA

Homology of Contig U35_6799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48530.1	724	1e-106	protein\|ZOS6-09 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi1g33970.1	702	2e-116
Arabidopsis v10	AT2G27100.1	720	6e-60	\| Symbols: SE \| C2H2 zinc-finger protein SERRATE (SE) \| chr2:11572587-11576357 FORWARD LENGTH=720