barSeed - Barley Seed Development Database

Probe CUST_27381_PI390587928

Source Contig U35_11810

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27381_PI390587928	Hv_44K_v2	TTCCATTTCGTAAGAGAGAAGGTGGCCATGAAAGCATTGAAAGTGCGGTTCATCTCCTCA	509	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26153.1	715	7e-23	525 - 584	98	59 / 60	plus	ABC21934
Harvest21	ABC21934	820	3e-25	510 - 569	100	60 / 60	plus	ABC21934
Harvest35	U35_11810	820	3e-25	510 - 569	100	60 / 60	plus

Contig Sequence (820 bp)

>U35_11810 820 Hv_44K_v2
TACAGAGCACCGTTGGGGCACTTCAATATTTAACCTTGACACGACCTGATTTATCATTTG
CCGTCAACAAGGTCTGCCAGTACCTATCACGACCTACTGATGTGCATTAGGAAGCTGTGA
AGACAATACTGCATTTTGTAAAAGGCACCGTGTCTACAGGATTGACACTTCGACGATCTC
CATCAACCTTAATAAGCATCTACACTAATGCGGATTGGGCCGGTTGCATTGATGATCGTA
GGTCCACAGGCGGCTTTGCAGTTTTCTTCGGGCCTAACCTCATCTCATGGAGTGCACGGA
AGCAGCCAACAGTGTCACGATCGTCAACTGAAGCAGAGTATAAAGCCCTGGCAAATGGAA
CAGCAGAAGCAACATGGTTGCAGTCCTTGTTGAGAGAACTCGGAGTATGTCAGCCTCGAG
CCCCTGTTCTTTGGTGTGACAATCTTGGCGCAACTTACCTCACGGCCAATCCAGTGTTTC
ATGCTCGCACTAAACACATCGAAGTAGATTTCCATTTCGTAAGAGAGAAGGTGGCCATGA
AAGCATTGAAAGTGCGGTTCATCTCCTCAGCTGACCAGGTTGCTGATGCATTCACAAAGC
CCTTGACAAAGTTGATGCTTGCACGCCTTCGTTCCAATCTCCACCACAGGTACTCGGTGA
CGGTGACCAACAGGTCCCGGAAGACGGTGCGGGGGCTCCAACTCGGCGTCTCGGAGCTCG
CCGGCAGGCTGTGGGGGCTCGACAAGGCGCGGTACGGGTACGTTCCCCGGAGGTGGCTGC
GGGCGCTGCGCCCCGGGAGGAGCGTCAGGTTTGGGTACGC

Homology of Contig U35_11810 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g17990.1	1662	8e-95	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g51145.1	428	7e-52
Arabidopsis v10	None